PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0087s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NF-YA | ||||||||
Protein Properties | Length: 298aa MW: 32381.2 Da PI: 8.3895 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 101.8 | 6.7e-32 | 141 | 197 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p++VNaKQy++Il+RRq+Rakle+++kl k+rkpylheSRh hA++R RgsgGrF SapurV1A.0087s0010.1.p 141 DGPIFVNAKQYHGILRRRQSRAKLEAQNKL-VKNRKPYLHESRHIHAVNRVRGSGGRF 197 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.3E-35 | 139 | 200 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.105 | 140 | 200 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.7E-23 | 143 | 165 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.5E-27 | 143 | 197 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 145 | 165 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.7E-23 | 174 | 197 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MSPIFKVDSP NQPYHEAKQL GFHLLDQESS STLSIGQSHN EMSAVGGVNP QDQNISSESD 60 ENCGKGVKGK MKPVLMLSTP NSVSKHSQAD CSYSMVLTPY ADPYFGGLCN PYELHAFSHL 120 GSHVVGMTAG RVPLPVDLAD DGPIFVNAKQ YHGILRRRQS RAKLEAQNKL VKNRKPYLHE 180 SRHIHAVNRV RGSGGRFLSK KKLQQSDTTP GQCNVTDTIH SHAKNDASEL ESFQSGTDQS 240 GASNTTCTDI TGVSYSNFTL RQPDHLFSGI AAHLGGGMEI NSRLMCRGNQ HHTSVVQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-20 | 143 | 202 | 4 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0087s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213015 | 1e-144 | AC213015.1 Populus trichocarpa clone POP034-G19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324716.3 | 0.0 | nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A2K1WWT4 | 0.0 | A0A2K1WWT4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s07220.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 1e-50 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0087s0010.1.p |