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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0086s0410.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 169aa MW: 19596.2 Da PI: 9.7926 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.9 | 3.4e-38 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk +rrkC +dC++apyfpae++++f++vhk FG +nv+++l++lp ++r+da+ slvyeA+ar+rdPv G++++i++l+q++ SapurV1A.0086s0410.1.p 5 SCAACKNHRRKCDDDCFIAPYFPAEKSRDFEAVHKHFGLHNVISILRSLPLQQRSDAVISLVYEANARVRDPVGGCTRIISALRQRI 91 6************************************************************************************** PP DUF260 88 eqlkaelallkee 100 ++lka+l+ +k++ SapurV1A.0086s0410.1.p 92 NTLKAQLNFVKNQ 104 ********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.697 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.8E-37 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MRRPSCAACK NHRRKCDDDC FIAPYFPAEK SRDFEAVHKH FGLHNVISIL RSLPLQQRSD 60 AVISLVYEAN ARVRDPVGGC TRIISALRQR INTLKAQLNF VKNQNAYYRT MKQQQLRQQN 120 MVHNAGFVDF LRENNFPSSN QDFNLLHENL ENPQQLQNPS SAQNQIAYH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-28 | 6 | 99 | 12 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-28 | 6 | 99 | 12 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0086s0410.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458812.1 | 2e-94 | LOB domain-containing protein 12 | ||||
Swissprot | Q9SHE9 | 4e-29 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A3N7F5N5 | 4e-93 | A0A3N7F5N5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s24470.1 | 3e-60 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23129 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-31 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0086s0410.1.p |