PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0086s0290.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 310aa    MW: 34352.5 Da    PI: 8.8136
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0086s0290.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.3e-19175208134
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                             Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  SapurV1A.0086s0290.1.p 175 CSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKAR 208
                             *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.848169205IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-13169209No hitNo description
SMARTSM004015.5E-20169220IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-15173208IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.00E-13174206No hitNo description
PfamPF003209.1E-17175208IPR000679Zinc finger, GATA-type
PROSITE patternPS003440175200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTPAYLNPAS SSFPFVDLRE DQQNLQLFLS PHQAATSLSG PTNVFNTSTH DHQRETKPGE  60
LRQQDDQEVD MYSISHGRSS DHKLFRSSCF HPEVNDHNNS NFHNSFSSKM EDEAEESGES  120
SVKWMPSKMS LMQKMTTSNC SEIDHKPMKF MLKFHSQQYQ NNEINSSSNS NIRVCSDCNT  180
TSTPLWRSGP RGPKSLCNAC GIRQRKARRA MAAAAAAAAN GTVISIEASS STKSSKVNNK  240
VKKTRTSHVS QNKKLSKPPE SSLQCQKKLC FKNLALSLSK NPALQQVLPH DVEEAAILLM  300
ELSCGFIHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0086s0290.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1476140.0EF147614.1 Populus trichocarpa clone WS0123_N07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019465.11e-175PREDICTED: putative GATA transcription factor 22
TrEMBLA9PGX11e-174A9PGX1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24560.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-19cytokinin-responsive gata factor 1