PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0086s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 383aa    MW: 43333.3 Da    PI: 5.419
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0086s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.74.7e-19161491128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevdiy...kvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..at 78 
                             lp G+rFhP d+elv++yL kk+++ +  +++ +v i+++ ++     ePw++  +  k + ++++fF++ dk+ +   +  r    
  SapurV1A.0086s0100.1.p  16 LPHGYRFHPDDQELVQFYLYKKITDLDhfTPI-NVpIRDCPLFgdqAREPWQIWdSFPKRHGENLFFFTQLDKRGQ---KFARkiCG 98 
                             699*********************99976555.4459999776222569****73444556678899999999754...55552234 PP

                     NAM  79 ksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               g+W++  k+ + +++   + ++  +kk +++   + ++ ++ +W+m ey+l
  SapurV1A.0086s0100.1.p  99 GPGTWHQVYKNPPFTVSidhTCQVAAIKKLFTYK--NPKSDQNGSWIMFEYSL 149
                             5899******999888776444456666666665..4555579********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-2011162IPR003441NAC domain
PROSITE profilePS5100523.95416164IPR003441NAC domain
PfamPF023651.1E-1517149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAMSVLQNPE TLTPQLPHGY RFHPDDQELV QFYLYKKITD LDHFTPINVP IRDCPLFGDQ  60
AREPWQIWDS FPKRHGENLF FFTQLDKRGQ KFARKICGGP GTWHQVYKNP PFTVSIDHTC  120
QVAAIKKLFT YKNPKSDQNG SWIMFEYSLP SLSEQTVLCQ LIRNEAHASE KVQATTTTTR  180
KRKRIADGDA AAKNTMFQKH RVEEDAQKQQ IMGFNGEAKT VSQEKNQQLH LELEPVFDNG  240
VQSDNFESFY FEPSTLLENY LMGAYSDITS TSNPAPSTVF TLDHAENLQP KNDDFHSEIF  300
GLLDLSGNCD EEAGVPSTLE TAEASAYWAK ATSTLDQPFT ADAVVSYLEL GVSDSSLTNW  360
SGSFSQMPNA ARRRSYRPDS RI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0086s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2843710.0GU284371.1 Populus balsamifera isolate KUU07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999305.11e-136PREDICTED: NAC transcription factor 29-like
TrEMBLB9HDP70.0B9HDP7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.14e-11NAC domain containing protein 96