PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0085s0540.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 368aa    MW: 41227.5 Da    PI: 5.2141
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0085s0540.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-151663148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+W+  Ed++lv  ++++G ++W++ ++  g+ R++k+c++rw +yl
  SapurV1A.0085s0540.1.p 16 RGPWSSAEDLKLVTFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                            89******************************99************97 PP
2Myb_DNA-binding49.31.1e-1569114148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++++eE++  + +++ lG++ W++Ia++++ gRt++++k+ w+++l
  SapurV1A.0085s0540.1.p  69 RGSFSKEEEDTVITLHQTLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114
                             899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-22766IPR009057Homeodomain-like
PROSITE profilePS5129411.5841163IPR017930Myb domain
SuperFamilySSF466891.98E-2814110IPR009057Homeodomain-like
SMARTSM007173.1E-111565IPR001005SANT/Myb domain
PfamPF002497.6E-141663IPR001005SANT/Myb domain
CDDcd001671.65E-81863No hitNo description
PROSITE profilePS5129424.74664118IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-2767118IPR009057Homeodomain-like
SMARTSM007171.2E-1468116IPR001005SANT/Myb domain
PfamPF002496.8E-1569114IPR001005SANT/Myb domain
CDDcd001671.10E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGKGRAPCCD KTQVIRGPWS SAEDLKLVTF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG SFSKEEEDTV ITLHQTLGNK WSKIASHLPG RTDNEIKNVW NTHLKKKLTL  120
KDEDESPHGD ESKESSSISS SSSSSCTIMS SGKRNLEMEL DHQKNQGSST KRPRITENVK  180
DSSPREVSNQ CRPTNKPKEL SSSSISSNNS NITISSQVDI SRPEDDQIGS LLNFIAQYDV  240
HNSSEEVSKP EEITAEIPFE SDYDFWNMLD SLSSFQSNEV QLENAEACQS SNFGNAYSTG  300
EEDQNKKWLR YLENELGLDA TKDENQESSL NNAAETLVPE SFQCEIPLKP AELQSGTIGN  360
FHLWPSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26131181105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00144DAPTransfer from AT1G16490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0085s0540.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307190.10.0transcription factor MYB10
TrEMBLB9H6240.0B9H624_POPTR; Uncharacterized protein
STRINGPOPTR_0005s09930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.19e-71myb domain protein 58