PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0084s0570.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 299aa MW: 32938.9 Da PI: 5.8662 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.2 | 3.9e-15 | 21 | 70 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E++RR++iN++f+ Lr+l+P++ ++K + a+ L +++ Y+++Lq SapurV1A.0084s0570.3.p 21 RSKHSVTEQKRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIAYVQYLQ 70 899*************************9....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.03E-17 | 17 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-20 | 17 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.561 | 19 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-12 | 21 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.87E-14 | 21 | 74 | No hit | No description |
SMART | SM00353 | 2.1E-11 | 25 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MIWDLYSEAD EKNSDKANAI RSKHSVTEQK RRSKINERFQ ILRDLIPHSD QKRDTASFLL 60 EVIAYVQYLQ EKVQKYEGPY PGWSPEPAKL MPWRNSHWRL QSIAGHPQAT INGSDPGAVF 120 PGKFDENNIS LTPAMLPNTP NLIESDHVTC KVLEHQPELA NKIVHLPMPA PVRSDGLAAP 180 PLEQPVSDAQ SAECPITSEM LNQQELAIEA GTISISGVYS QELLNTLTQA MQSAGIDLSQ 240 ANISVQIDLG KRANRGLASG TSTSKDPQNP QACNQAMTHL RDASDGEDSD QARKRLKT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0084s0570.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011009409.1 | 0.0 | PREDICTED: transcription factor BIM2 | ||||
Swissprot | Q9CAA4 | 1e-103 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | B9HWU2 | 0.0 | B9HWU2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s14740.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-106 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0084s0570.3.p |
Publications ? help Back to Top | |||
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