PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0079s0530.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 39045.9 Da PI: 6.3787 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.8 | 2.2e-14 | 164 | 210 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L SapurV1A.0079s0530.2.p 164 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 210 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.907 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-12 | 164 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.27E-14 | 165 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.5E-15 | 165 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-13 | 167 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.08E-5 | 174 | 213 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 9.3E-4 | 246 | 299 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MCGFKEEEYQ EEKTIHNLQN YQEQLFLQYN QQMQQHQHQQ SSDIYGGERG PGLIFPEVSP 60 ILPWPLPPPH SFNPAHFTSN HPVRDHDPFL IPPPIPSSYG GFFNRRSPSL QFAYDGTSSD 120 HLRIISDTLG PVVQPGSTPF GLQAELSKMT AQEIMDAKAL AASKSHSEAE RRRRERINNH 180 LAKLRSLLPS TTKTDKASLL AEVIQHVKEL KRQTSLIAET SPVPTEIDEL TVDTADEDGK 240 FVLKASLCCE DRSDLLPDLI KTLKALRLRT LKAEITTLGG RVKNVLFIAG EDDSSSDIND 300 QQPLQYSISS IQEALKSVME KTGGDESSSG SAKRQRTNLN ILQQQHRSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 174 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0079s0530.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149481 | 0.0 | AC149481.1 Populus trichocarpa clone Pop1-16J18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021594.1 | 0.0 | PREDICTED: transcription factor bHLH30-like | ||||
Refseq | XP_011021607.1 | 0.0 | PREDICTED: transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 1e-111 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | B9HIY4 | 0.0 | B9HIY4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s11490.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-89 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0079s0530.2.p |
Publications ? help Back to Top | |||
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