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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0079s0450.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | RAV | ||||||||
Protein Properties | Length: 375aa MW: 41748.6 Da PI: 9.3708 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.5 | 8.1e-14 | 77 | 125 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g SapurV1A.0079s0450.1.p 77 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDTAAQRFRG 125 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 100.8 | 8e-32 | 213 | 314 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h ++ + +++ l led sg++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v SapurV1A.0079s0450.1.p 213 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqstSSCSSKGVLLNLEDMSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVC 299 89*************************9887744445899*********************************************** PP EEE-SSSEE..EEEE CS B3 82 Fkldgrsefelvvkv 96 F+++ e++l++ + SapurV1A.0079s0450.1.p 300 FQRSTGPEKQLYIDW 314 **8766777677766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.1E-9 | 77 | 125 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.23E-26 | 77 | 132 | No hit | No description |
SuperFamily | SSF54171 | 1.83E-17 | 77 | 134 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-21 | 78 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-29 | 78 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.271 | 78 | 133 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-41 | 205 | 321 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-31 | 211 | 318 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.79E-30 | 212 | 303 | No hit | No description |
PROSITE profile | PS50863 | 14.325 | 213 | 318 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-29 | 213 | 314 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-25 | 213 | 318 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MDGSCIDEST TNSTDNSISI TPTNLTPSPS PSPSPSPTRA PTTKSPPESL CRVGSGNSVI 60 LDSESGVEAE SRKLPSSKYK GVVPQPNGRW GAQIYEKHQR VWLGTFNEED EAARAYDTAA 120 QRFRGRDAVT NFKLVNETED DEIEAAFLTS HSKAEIVDML RKHTYNDELE QSKRSHKSNN 180 GVNGKQHKNT ANYGSNSYDH GFDQALKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKHFP 240 LQSTSSCSSK GVLLNLEDMS GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLKAGDIVCF 300 QRSTGPEKQL YIDWKARSGS NPAQPIQMVR LFGVNILNVP GMENGCNGKR SVREMELLSL 360 NHQYSKKQRI IGAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-59 | 210 | 321 | 11 | 121 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0079s0450.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021709.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like | ||||
Swissprot | Q9C6M5 | 1e-152 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A2K1ZFR1 | 0.0 | A0A2K1ZFR1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s11600.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-150 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0079s0450.1.p |