PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0079s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 306aa    MW: 34458.6 Da    PI: 6.6558
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0079s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.2e-142067148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT eEd  l +++ + G g+W+  a+  g++Rt+k+c++rw++yl
  SapurV1A.0079s0020.1.p 20 RGPWTLEEDTSLTHYISRQGEGRWNMLAKGAGLKRTGKSCRLRWLNYL 67
                            89********************************************97 PP
2Myb_DNA-binding51.52.3e-1673116146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  SapurV1A.0079s0020.1.p  73 RGNLTPQEQLLILELHSKWGNR-WSKIAAHLP-GRTDNEIKNYWRT 116
                             7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.7691567IPR017930Myb domain
SuperFamilySSF466891.12E-2917114IPR009057Homeodomain-like
SMARTSM007171.9E-111969IPR001005SANT/Myb domain
PfamPF002495.8E-132067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-212174IPR009057Homeodomain-like
CDDcd001671.18E-82267No hitNo description
PROSITE profilePS5129424.91968122IPR017930Myb domain
SMARTSM007173.1E-1572120IPR001005SANT/Myb domain
PfamPF002492.1E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2375121IPR009057Homeodomain-like
CDDcd001677.23E-1277116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MLGARKRVCN PGEEESGLRR GPWTLEEDTS LTHYISRQGE GRWNMLAKGA GLKRTGKSCR  60
LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKIAA HLPGRTDNEI KNYWRTKVQK  120
EARHLNIEAN SKRFLDAVRS YWMPRLVQKM EQASYSSSST ILDSLDNREV RSTPSNPPAP  180
NSLPCPPESR FTHYSNLGSD NSCSVTSPYL LSTNFNTISQ QPDEILETPS CSPLLGDSVC  240
NNLVRMGTCN EEGSSCDMDG FDVASAGMGT YGNSPFECQM AGGDWVYDSM EDTLWNMDDM  300
WPFRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24181225108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0079s0020.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4345592e-32AB434559.1 Fagus crenata FcMYBS14 mRNA for transcription factor MYBS14, partial cds.
GenBankAB4345932e-32AB434593.1 Fagus crenata FcMYBC1 mRNA for transcription factor MYBC1, partial cds.
GenBankAB4346072e-32AB434607.1 Fagus crenata FcMYBD2 mRNA for transcription factor MYBD2, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462397.10.0transcription factor MYB62
SwissprotQ9C9G71e-90MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A1L6K4R50.0A0A1L6K4R5_POPTO; Uncharacterized protein
STRINGPOPTR_0008s12130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-88myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]