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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0078s0420.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | CO-like | ||||||||
Protein Properties | Length: 439aa MW: 48184 Da PI: 4.9023 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.4 | 1.7e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H H++v SapurV1A.0078s0420.1.p 16 ARACDSCIKKRARWYCAADDAFLCQACDSSVHTAnslarrHERV 59 578*****************************556777778876 PP | |||||||
2 | CCT | 67.5 | 3.5e-23 | 390 | 433 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ SapurV1A.0078s0420.1.p 390 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 433 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.8E-10 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.007 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.9E-7 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.47E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 390 | 432 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.9E-18 | 390 | 432 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MICSKSLANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHTAN SLARRHERVR 60 LKSASFKDEG SKETSMPSWH GGFTRKARTP RHGKPVSQSK IEGTIRNIPL VPEVGSDEIS 120 LEDNEEEHLL YRVPIFEPFA AELCTSTTIS DEAGVGVPAG GDDTDQRVAD SSGIESKVLL 180 GGSEGKDAES LHGFLPSDMD LAEFAADMES LLGRGLENES FGMEELGLMD CKEENVLEVK 240 GYPLGNGKVK VEEEEDAGME EKDVRECHAD IEIDMAKDPP FELSFDFDSP ATCGEECEKV 300 EGVLLKNSDG EYDDYGGAKK KTKTLLSLDY EAVMAAWASQ GSPWTNGYRP DFDPDECWPD 360 CMGISGTQLH HPFGDMSGSG AHPALVDGGR EARVSRYREK RRTRLFSKKI RYEVRKLNAE 420 KRPRMKGRFV KRTAIAAL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 400 | 416 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0078s0420.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC477294 | 0.0 | KC477294.1 Populus tomentosa COL6-2 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002315940.2 | 0.0 | zinc finger protein CONSTANS-LIKE 6 | ||||
TrEMBL | A0A2K1YT28 | 0.0 | A0A2K1YT28_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s13490.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-104 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0078s0420.1.p |