PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0076s0280.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 914aa    MW: 100854 Da    PI: 6.5716
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0076s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-23134235199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++p++ ae+       ++ ++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+
  SapurV1A.0076s0280.1.p 134 FCKTLTASDTSTHGGFSVPRRSAEKVfppldySHTPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVL 219
                             99****************************98444443.49********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F   ++++ +l+++++r+
  SapurV1A.0076s0280.1.p 220 FI--WNEKNQLLLGIRRA 235
                             **..8899999****997 PP
2Auxin_resp119.13.6e-39260343183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+t+s F+++YnPras+seFv+++ k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  SapurV1A.0076s0280.1.p 260 AAHAAATNSRFTIFYNPRASPSEFVIPLVKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 343
                             79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-47119263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-41126249IPR015300DNA-binding pseudobarrel domain
CDDcd100179.80E-22133234No hitNo description
PROSITE profilePS5086312.449134236IPR003340B3 DNA binding domain
PfamPF023622.7E-21134235IPR003340B3 DNA binding domain
SMARTSM010193.4E-24134236IPR003340B3 DNA binding domain
PfamPF065073.9E-34260343IPR010525Auxin response factor
PfamPF023092.7E-7765857IPR033389AUX/IAA domain
SuperFamilySSF542772.03E-6769850No hitNo description
PROSITE profilePS5174521.763775859IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MRLSSSSSSS PNGFNQQTQE GDKKCLNSEL WHACAGPLVS LPHVGSRVVY FPQGHSEQVA  60
ASTNKEIDAH IPNYPNLPPH LICQLHNVTM HADVETDEVY AQMTLQPLSQ EDQKDAYLLP  120
AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRSAEKVF PPLDYSHTPP AQELIARDLH  180
DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRANRPQT  240
FMPSSVLSSD SMHIGLLAAA AHAAATNSRF TIFYNPRASP SEFVIPLVKY IKAVYHTRVS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGERQPRVSL  360
WEIEPLTTFP MYPSAFPMRL KRPWPSGLPS FHGLKDGDFG INSPMMWLQG GVGDLGVQSL  420
NFQSFGGAPW IQPRFDASMP ALQPDVYQTL AAAALQEMRT VESSKLGSQS LSQFQQSQNV  480
SNGPTALIQR QMLQQSNLQN AFLQNFQENQ ASTQAQLLQQ QLQHCNQYTD QQQQHQPQPQ  540
QVQQPKQLNE LFAQQQIPAV MSALPHLTSV APSQSPSMQP ISSQCQQQAF SEPLGIAMAS  600
SNVSSMHSVI GSLSQDGGSH LLNSNGSNPV ISSALSSKRA AIDPQLSSGA AHCVLPQVEQ  660
LRATQSTMSD LATLLPPFSG REYSAYQGAN DPQNNLLFGV NMDSSTFMLQ HGIPNLRNIG  720
TENDPLSMPF AASTFTSATG NDIPLNSDMT ASSCVDESGF LQSSENVDQA NPSTRTFVKV  780
QKSGYCGRSL DISKFSSYDE LRSELARLFC LEGQLEDPQR SGWQLVFVDR ENDVLLLGDD  840
PWQEFVNNVW YIRILSPLEV QQMGKEGLSP AASVPSQKLS NSNSDGHMNR HGFRNSSNGI  900
SSMGSLDYQG RCT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631736441388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0076s0280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5916890.0KM591689.1 Salix matsudana auxin response factors (ARF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307574.20.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0B5CW500.0A0A0B5CW50_9ROSI; Auxin response factor
STRINGPOPTR_0002s05590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]