PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0076s0230.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 544aa MW: 59367.6 Da PI: 7.4148 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.3 | 9.9e-17 | 351 | 397 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq SapurV1A.0076s0230.5.p 351 VHNLSERRRRDRINEKMRALQELIPHC-----YKTDKASMLDEAIEYLKSLQ 397 6*************************9.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.1E-20 | 345 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.146 | 347 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.55E-18 | 350 | 401 | No hit | No description |
Pfam | PF00010 | 4.8E-14 | 351 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-20 | 351 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-18 | 353 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MTQSVILVLT AMNHCIPDWS FEGGLPVSNQ KQPIEPNNDL VELLWRNGQV VLHSQALRKP 60 NPHVQKHDSP TVKDSGSILN SSHLIQDDET VSWIQYPLED SFEKEFCSNF FSELPPPLSD 120 QILEEKSAKF DASAPSQQQH QHQHLLQLNN SKLPVVSEFS GNQMPPPRTQ VLEKNHTGVG 180 GFGKAVNANF SQFSAPFKGG DFRTSSRQFG GQGSGNSPQG EVRECSVVTV GSSNQIPHDR 240 DMSRASSNAI GTSTGFSTGP SMDDPRKIVS QSERGKTETL EAALTSSSGG SGSSFGRTCK 300 QSAGPSSSQK RKTIDTGDSE YQSEDAELDS MAGNNPAKRS GSTRRSRAAE VHNLSERRRR 360 DRINEKMRAL QELIPHCYKT DKASMLDEAI EYLKSLQLQL QVMWMGSGMA PMVFPGVQHF 420 MSRMGMGMAP PLPSMQNPMH LPRVPLIDQS IPIAPSQNQG VMCQTPVLNP VNFQNQMQNP 480 AFVNQYARYM GFPMQPAFQP MNMFRFGSQT GQQDQMVAPT SSGGRPLSAG SAVSDAPLSG 540 KIG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 355 | 360 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0076s0230.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011032742.1 | 0.0 | PREDICTED: transcription factor PIF4-like isoform X2 | ||||
TrEMBL | B9GSQ9 | 0.0 | B9GSQ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s22870.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59060.1 | 3e-53 | phytochrome interacting factor 3-like 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0076s0230.5.p |