PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0076s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 603aa    MW: 66233.3 Da    PI: 7.3012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0076s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.11.1e-16374420455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  SapurV1A.0076s0230.1.p 374 VHNLSERRRRDRINEKMRALQELIPHC-----YKTDKASMLDEAIEYLKSLQ 420
                             6*************************9.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-20368432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.83E-18373424No hitNo description
PfamPF000105.5E-14374420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-20374428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-18376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MNHCIPDWSF EGGLPVSNQK QPIESVLPLN FDYFIVKASI FLKVVDFGLV APSFTSCRPN  60
NDLVELLWRN GQVVLHSQAL RKPNPHVQKH DSPTVKDSGS ILNSSHLIQD DETVSWIQYP  120
LEDSFEKEFC SNFFSELPPP LSDQILEEKS AKFDASAPSQ QQHQHQHLLQ LNNSKLPVVS  180
EFSGNQMPPP RTQVLEKNHT GVGGFGKAVN ANFSQFSAPF KGGDFRTSSR QFGGQGSGNS  240
PQGEVRECSV VTVGSSNQIP HDRDMSRASS NAIGTSTGFS TGPSMDDPRK IVSQSERGKT  300
ETLEAALTSS SGGSGSSFGR TCKQSAGPSS SQKRKTIDTG DSEYQSEDAE LDSMAGNNPA  360
KRSGSTRRSR AAEVHNLSER RRRDRINEKM RALQELIPHC YKTDKASMLD EAIEYLKSLQ  420
LQLQVMWMGS GMAPMVFPGV QHFMSRMGMG MAPPLPSMQN PMHLPRVPLI DQSIPIAPSQ  480
NQGVMCQTPV LNPVNFQNQM QNPAFVNQYA RYMGFPMQPA FQPMNMFRFG SQTGQQDQMV  540
APTSSGGRPL SAGSAVSDAP LSGKIGKSFH SLYLPGKDSS LFSITSQTFE FLDEEFHRHH  600
PV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378383ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0076s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032742.10.0PREDICTED: transcription factor PIF4-like isoform X2
TrEMBLB9GSQ90.0B9GSQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s22870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.15e-53phytochrome interacting factor 3-like 6