PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0076s0070.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 232aa MW: 26753.5 Da PI: 9.5317

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0076s0070.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.3	4.2e-51	24	151	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 pGfrFhPtdeelv +yL++kve+k+ ++ e+ik++diyk++PwdLpk+ + ++kewyfF+ r +ky+++ r+nr+t+sg+Wkatg SapurV1A.0076s0070.2.p 24 LPGFRFHPTDEELVGFYLRRKVEKKPSSI-EIIKQIDIYKYDPWDLPKASTVGDKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGI 109 59**********************999.89***********888889****************************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++s ++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl SapurV1A.0076s0070.2.p 110 DKPIYSFkeTHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 151 *97445566*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-55	15	180	IPR003441	NAC domain
PROSITE profile	PS51005	52.977	23	181	IPR003441	NAC domain
Pfam	PF02365	4.6E-26	25	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEAVTGMSGC ISSENYNKEK EERLPGFRFH PTDEELVGFY LRRKVEKKPS SIEIIKQIDI 60 YKYDPWDLPK ASTVGDKEWY FFCIRGRKYR NSVRPNRVTR SGFWKATGID KPIYSFKETH 120 ECIGLKKSLV YYRGSAGKGT KTDWMMHEFR LPPDGKTTNP FSPMNIAQEA EVWTLCRILK 180 RIPSYKKNVP AVPATEKTPI NRDHSNLKTC SSFESETSTE QYVSFGDSFV Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	25	187	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	25	187	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	25	187	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	25	187	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-47	25	187	22	174	NAC domain-containing protein 19
3swm_B	2e-47	25	187	22	174	NAC domain-containing protein 19
3swm_C	2e-47	25	187	22	174	NAC domain-containing protein 19
3swm_D	2e-47	25	187	22	174	NAC domain-containing protein 19
3swp_A	2e-47	25	187	22	174	NAC domain-containing protein 19
3swp_B	2e-47	25	187	22	174	NAC domain-containing protein 19
3swp_C	2e-47	25	187	22	174	NAC domain-containing protein 19
3swp_D	2e-47	25	187	22	174	NAC domain-containing protein 19
4dul_A	1e-47	25	187	19	171	NAC domain-containing protein 19
4dul_B	1e-47	25	187	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0076s0070.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002307563.1	1e-138	transcription factor JUNGBRUNNEN 1 isoform X1
Swissprot	Q9SK55	2e-89	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	B9H845	1e-136	B9H845_POPTR; Uncharacterized protein
STRING	POPTR_0005s22710.1	1e-137	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	3e-90	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	SapurV1A.0076s0070.2.p

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]