 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
SapurV1A.0074s0350.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
| Family |
C2H2 |
| Protein Properties |
Length: 457aa MW: 50930.1 Da PI: 9.2041 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0074s0350.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 18.5 | 5.4e-06 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C++C++ F r nL+ H r+H
SapurV1A.0074s0350.1.p 57 YVCEICNQGFQRDQNLQMHRRRH 79
9*********************9 PP
|
| 2 | zf-C2H2 | 16 | 3.4e-05 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k + +s++k H++t+
SapurV1A.0074s0350.1.p 134 WVCEKCSKGYAVQSDYKAHLKTC 156
58*******************98 PP
|
| 3 | zf-C2H2 | 10.9 | 0.0014 | 164 | 182 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS
zf-C2H2 5 dCgksFsrksnLkrHirtH 23
dCg++Fsr +++ H+ t+
SapurV1A.0074s0350.1.p 164 DCGRVFSRVESFIEHQDTC 182
9***************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 457 aa
Download sequence Send
to blast |
MLSNSSPSPL PSNSEPFFCL ENGNNNSKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE 60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPSCLHHDP CHALGDLVGI 120
KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD 180
TCNMGRLRSE SQSLQPPACL SRTASSPSPS SDTNFSTAPW TPLIIPRPTT TSDPAMFLSP 240
TSATNAVDKT DHSSKTAAQY HNLDLQLSTT SRNPLEVSVS PKRDDNYSTQ LQLSIGSSDV 300
SDKNESNITY TNKDHAGKSS PGESNNSPKP ELGASRLKEQ AREQLKMAMA EKIYAEEARK 360
QAKRQIELAE QEFSNAKRIR QQAQAELGKA QVLRQHAIKQ IESTILQITC HACKQKFHAR 420
APADENSLVF SYISSSITEG EVEHSNGIGL ARTSNR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kim JY,Ryu JY,Baek K,Park CM
High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
New Phytol., 2016. 209(1): p. 265-79
[PMID:26256266] - Ryu JY,Kim JY,Park CM
Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
Plant Signal Behav, 2015. 10(11): p. e1093715
[PMID:26452406] - Qu Y, et al.
Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
J. Exp. Bot., 2017. 68(17): p. 4851-4867
[PMID:28992128] - Shi H, et al.
Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
J. Pineal Res., 2018. 65(2): p. e12494
[PMID:29607541]
|
