PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0074s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 495aa    MW: 54665.8 Da    PI: 6.4343
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0074s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-1867111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             r +WT+eE++++++a k++G g W++I +++g ++t+ q++s+ qky
  SapurV1A.0074s0170.1.p  67 REKWTEEEHQRFLEALKLYGRG-WRKIQEHVG-TKTAVQIRSHAQKY 111
                             789*******************.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1661114IPR009057Homeodomain-like
PROSITE profilePS5129422.55962116IPR017930Myb domain
TIGRFAMsTIGR015577.8E-1765114IPR006447Myb domain, plants
SMARTSM007173.6E-1466114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-1067113IPR009057Homeodomain-like
PfamPF002492.3E-1667111IPR001005SANT/Myb domain
CDDcd001679.54E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAAATAAAAA AKEQIEGTMS NSFGKASDCC TNGSEQSEAV LQMNELHSFR SDNIPKVRKP  60
YTITKQREKW TEEEHQRFLE ALKLYGRGWR KIQEHVGTKT AVQIRSHAQK YFSKVVWESS  120
GSNECSLKPI EIPPPRPKRK PTHPYPRKSV NIRKGTPTSS QLDRSPSANS SASEKENPSP  180
TSVLSALTSD TLGTILSEKQ NACSSPTSCT TDMRSVSLSP SAKETEHVTS NSSREEEKET  240
FSFTQMSCSP LEKFLSKKFE LGSEDTVCAE GDATKEASST SIKLFGMTVT VADSHKKYPP  300
GAELVPFMTS NENRDNADTD KEKPAQTLPL KQSDTELSLG MENSDQNQLP SPASVFECTE  360
IQRGTANYFA TNPSIPWWLF GNDVSSLPPP SYDHTSPHIP IPSYVAERSE EKEILNERSC  420
TGSNAGSVGE LENVEWSLDV VDSQWRQPSV EGKSSLQKCT RGFVPYKRCF GERDVKSTAI  480
VYEERDRQRA RVCS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0074s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047787.10.0PREDICTED: protein REVEILLE 7-like
TrEMBLB9N3790.0B9N379_POPTR; Uncharacterized protein
STRINGPOPTR_0015s05430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.12e-45MYB_related family protein