PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0071s0650.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 258aa MW: 30003.8 Da PI: 5.4914 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 76.4 | 5.9e-24 | 78 | 168 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCs+eg+r+++ ++++ + ++tr gC+a+l++ ++ +w vtk+ eH SapurV1A.0071s0650.1.p 78 EFYIAYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSREGFRDKKYVYRKDR-VlpPPPVTREGCQAMLRLAFKDGITWAVTKFIAEH 163 6******************************************99883333.234899***************************** PP FAR1 86 nHela 90 nH+l+ SapurV1A.0071s0650.1.p 164 NHALM 168 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-21 | 78 | 168 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDSTSKQAFD LDETESCFAV ENYDEHEFVD DELSGNIELC LDEVDKIIEQ SSETLSSVND 60 AIEPYIGMEF KSREDAREFY IAYGRRTGFT VRIHHNRRSR INNMVIGQDF VCSREGFRDK 120 KYVYRKDRVL PPPPVTREGC QAMLRLAFKD GITWAVTKFI AEHNHALMSP SKVPWRGSAK 180 SMVSEDEKDR RIRELTIELN NEKQRCKRRC AAYEEQLRKV LSYVEEHTIH LSNKVQGIVN 240 KVKELENEME DSDCKYV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0071s0650.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303020.1 | 1e-178 | protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | B9GNH4 | 1e-177 | B9GNH4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s24030.1 | 1e-178 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-36 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0071s0650.1.p |