PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0071s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 343aa MW: 36505.4 Da PI: 7.7769 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.5 | 1.6e-10 | 275 | 320 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L Av++Ik Lq SapurV1A.0071s0010.1.p 275 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDFAVQHIKGLQ 320 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.618 | 269 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-14 | 272 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.70E-10 | 273 | 324 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.7E-13 | 274 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-8 | 275 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-12 | 275 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MYQQPSSSSS SPQKPAVPGG LTRYGSAPGS FLTRAVDSVI GVDRDLSGLG STSLVGSRQY 60 FSGDSSSVTS ESTCKVNSSS CDPKAPKSGG SLQKSYGLNE VEHGAGSLVR QRSSPAGFLS 120 HLATENGGFS ITRGSGGYNV HSGPGGGHSV SRLKPQLSFT RQESLSQISE VSENVVEGIG 180 SDNNHQNCSH SYSAAGFGME SWDNANSIVF SGPPSKQARN GDGDIYSCFN GLETQFSLPQ 240 TSLEIETVEK LLHIPEDSVP CKIRAKRGFA THPRSIAERE RRTRISGKLK KLQDLVPNMD 300 KQTSYADMLD FAVQHIKGLQ NEVEKLRKEM GNCTCGCEQS TP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0071s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042788.1 | 0.0 | PREDICTED: transcription factor bHLH128-like | ||||
Swissprot | Q8H102 | 2e-91 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A2K2BN68 | 0.0 | A0A2K2BN68_POPTR; BHLH family protein | ||||
STRING | cassava4.1_010829m | 1e-173 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7680 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 2e-83 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0071s0010.1.p |
Publications ? help Back to Top | |||
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