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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0070s0910.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 112aa MW: 12407.4 Da PI: 9.197 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 48.7 | 2.2e-15 | 6 | 104 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer...............edamsslvyeAearardP 72 +CaaC++ rr+C +d vlap fp + pk+fanv Ga++++++ + p + da+++ eA ra P SapurV1A.0070s0910.1.p 6 RCAACRFSRRTCIQDRVLAPDFPPNYPKRFANV---LGARKITEFKRLFPLPAKhmliitsvqlavilsCDAAECTSIEASSRAVHP 89 6*****************************985...7999999998888666655789999999999999***************** PP DUF260 73 vyGavgvilklqqql 87 v+G++g+i++lqq+ SapurV1A.0070s0910.1.p 90 VHGCAGIISQLQQHQ 104 ***********9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.714 | 5 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-13 | 6 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MSRSTRCAAC RFSRRTCIQD RVLAPDFPPN YPKRFANVLG ARKITEFKRL FPLPAKHMLI 60 ITSVQLAVIL SCDAAECTSI EASSRAVHPV HGCAGIISQL QQHQTIDAQS EL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0070s0910.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011046521.1 | 9e-33 | PREDICTED: LOB domain-containing protein 24-like | ||||
TrEMBL | A0A2K1YZY8 | 4e-30 | A0A2K1YZY8_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0010s25720.1 | 6e-31 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-14 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0070s0910.1.p |