PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0070s0640.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 830aa MW: 94257.2 Da PI: 6.3243 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 49.3 | 1.7e-15 | 66 | 141 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHn 86 fY++YAk++GFs+ + + ++sk +g i++ +f Cske +++++ ++ C+a l++ +++ +++w+vtk+++eHn SapurV1A.0070s0640.7.p 66 FYDTYAKRMGFSTHVGQFTRSKPDGPIVTWEFACSKEVFKRKNIES--------------CNAVLRIVRKDshSDNWVVTKFVEEHN 138 9***************************************998877..............******98887789************* PP FAR1 87 Hel 89 H+l SapurV1A.0070s0640.7.p 139 HSL 141 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-12 | 66 | 141 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.8E-31 | 242 | 334 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.09 | 519 | 555 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.7E-11 | 519 | 553 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.3E-8 | 530 | 557 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 830 aa Download sequence Send to blast |
MDGEVVDVEV REGNNHLAVI ANPNETEKQN TTENYMEAAV RNQDDDGIAL PHVGMEFESE 60 DAAKTFYDTY AKRMGFSTHV GQFTRSKPDG PIVTWEFACS KEVFKRKNIE SCNAVLRIVR 120 KDSHSDNWVV TKFVEEHNHS LGTPDRSHVT HEPNRVRSAI PVEPNNLVRN EASLPATYFR 180 APGGRKTLGR DAHSLLNYFK KMQAENPGFY YAIQLDDENR MTNVFWADAR SRIAYSHFGD 240 AVVFDTMYRP NQYQVPFAPF TGVNHHGQMV LFGCALLLDE SESSFTWLFR TWLSAMNGQP 300 PVSFTTDQDR AIHMAVAQVF PETRHCICKW HILREGQDRL AHIYLAHPSF YGELYSCINS 360 SETIEDFESS WASLLEKFDL QRIEWLQAVY NARQQWAPVY FRNTFFAALS SNHGISSFFD 420 GYVNQQTTIP LFFKQYELVL EHSLEKEIEA DYDTICTTPV LKTPSPMEQQ AANLYTKKVF 480 AKFQEELVET FVYTANKIER DGMATKYRVA KYEHDDKAYI VTLNISEMQA SCSCQMFEYC 540 GILCRHILTV FTVTNILTLP SHYILNRWTR NAKSWIGSEE HSADSQGLDT LTSRFNNLCL 600 EAIRYAEEGA IATETYNAAI SNLKEGGKKI ASVKKSVAKV TPYRSNFSGN SQEENNKKTP 660 TAPHEMIPSL WPWQDAMPPR FNLNDGGVPC ADLNQPSMAP VSIHHDGVPT DNSVVLTYFK 720 SMTWVIENKT STPAGKVAVI NLKMQDYGKN PSGETEVQFR LTKVTLEPML RSMAYISQQL 780 STPANRVAVI NLKLQDTKTT TGETEVKFQV SRDTLGSMLR SMAYIREQL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0070s0640.7.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011032969.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_011032970.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A3N7FD82 | 0.0 | A0A3N7FD82_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s01240.3 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0070s0640.7.p |
Publications ? help Back to Top | |||
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