PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0070s0640.6.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 830aa MW: 94257.2 Da PI: 6.3243

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0070s0640.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.3	1.7e-15	66	141	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHn 86 fY++YAk++GFs+ + + ++sk +g i++ +f Cske +++++ ++ C+a l++ +++ +++w+vtk+++eHn SapurV1A.0070s0640.6.p 66 FYDTYAKRMGFSTHVGQFTRSKPDGPIVTWEFACSKEVFKRKNIES--------------CNAVLRIVRKDshSDNWVVTKFVEEHN 138 9*************************************998877..............**98887789*********** PP FAR1 87 Hel 89 H+l SapurV1A.0070s0640.6.p 139 HSL 141 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-12	66	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.8E-31	242	334	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.09	519	555	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.7E-11	519	553	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.3E-8	530	557	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence Send to blast
MDGEVVDVEV REGNNHLAVI ANPNETEKQN TTENYMEAAV RNQDDDGIAL PHVGMEFESE 60 DAAKTFYDTY AKRMGFSTHV GQFTRSKPDG PIVTWEFACS KEVFKRKNIE SCNAVLRIVR 120 KDSHSDNWVV TKFVEEHNHS LGTPDRSHVT HEPNRVRSAI PVEPNNLVRN EASLPATYFR 180 APGGRKTLGR DAHSLLNYFK KMQAENPGFY YAIQLDDENR MTNVFWADAR SRIAYSHFGD 240 AVVFDTMYRP NQYQVPFAPF TGVNHHGQMV LFGCALLLDE SESSFTWLFR TWLSAMNGQP 300 PVSFTTDQDR AIHMAVAQVF PETRHCICKW HILREGQDRL AHIYLAHPSF YGELYSCINS 360 SETIEDFESS WASLLEKFDL QRIEWLQAVY NARQQWAPVY FRNTFFAALS SNHGISSFFD 420 GYVNQQTTIP LFFKQYELVL EHSLEKEIEA DYDTICTTPV LKTPSPMEQQ AANLYTKKVF 480 AKFQEELVET FVYTANKIER DGMATKYRVA KYEHDDKAYI VTLNISEMQA SCSCQMFEYC 540 GILCRHILTV FTVTNILTLP SHYILNRWTR NAKSWIGSEE HSADSQGLDT LTSRFNNLCL 600 EAIRYAEEGA IATETYNAAI SNLKEGGKKI ASVKKSVAKV TPYRSNFSGN SQEENNKKTP 660 TAPHEMIPSL WPWQDAMPPR FNLNDGGVPC ADLNQPSMAP VSIHHDGVPT DNSVVLTYFK 720 SMTWVIENKT STPAGKVAVI NLKMQDYGKN PSGETEVQFR LTKVTLEPML RSMAYISQQL 780 STPANRVAVI NLKLQDTKTT TGETEVKFQV SRDTLGSMLR SMAYIREQL*

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence Send to blast

MDGEVVDVEV REGNNHLAVI ANPNETEKQN TTENYMEAAV RNQDDDGIAL PHVGMEFESE  60
DAAKTFYDTY AKRMGFSTHV GQFTRSKPDG PIVTWEFACS KEVFKRKNIE SCNAVLRIVR  120
KDSHSDNWVV TKFVEEHNHS LGTPDRSHVT HEPNRVRSAI PVEPNNLVRN EASLPATYFR  180
APGGRKTLGR DAHSLLNYFK KMQAENPGFY YAIQLDDENR MTNVFWADAR SRIAYSHFGD  240
AVVFDTMYRP NQYQVPFAPF TGVNHHGQMV LFGCALLLDE SESSFTWLFR TWLSAMNGQP  300
PVSFTTDQDR AIHMAVAQVF PETRHCICKW HILREGQDRL AHIYLAHPSF YGELYSCINS  360
SETIEDFESS WASLLEKFDL QRIEWLQAVY NARQQWAPVY FRNTFFAALS SNHGISSFFD  420
GYVNQQTTIP LFFKQYELVL EHSLEKEIEA DYDTICTTPV LKTPSPMEQQ AANLYTKKVF  480
AKFQEELVET FVYTANKIER DGMATKYRVA KYEHDDKAYI VTLNISEMQA SCSCQMFEYC  540
GILCRHILTV FTVTNILTLP SHYILNRWTR NAKSWIGSEE HSADSQGLDT LTSRFNNLCL  600
EAIRYAEEGA IATETYNAAI SNLKEGGKKI ASVKKSVAKV TPYRSNFSGN SQEENNKKTP  660
TAPHEMIPSL WPWQDAMPPR FNLNDGGVPC ADLNQPSMAP VSIHHDGVPT DNSVVLTYFK  720
SMTWVIENKT STPAGKVAVI NLKMQDYGKN PSGETEVQFR LTKVTLEPML RSMAYISQQL  780
STPANRVAVI NLKLQDTKTT TGETEVKFQV SRDTLGSMLR SMAYIREQL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0070s0640.6.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011032969.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_011032970.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A3N7FD82	0.0	A0A3N7FD82_POPTR; Uncharacterized protein
STRING	POPTR_0008s01240.3	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	SapurV1A.0070s0640.6.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]