PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0070s0640.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 861aa MW: 97633 Da PI: 6.4819 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 49.2 | 1.7e-15 | 66 | 141 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHn 86 fY++YAk++GFs+ + + ++sk +g i++ +f Cske +++++ ++ C+a l++ +++ +++w+vtk+++eHn SapurV1A.0070s0640.4.p 66 FYDTYAKRMGFSTHVGQFTRSKPDGPIVTWEFACSKEVFKRKNIES--------------CNAVLRIVRKDshSDNWVVTKFVEEHN 138 9***************************************998877..............******98887789************* PP FAR1 87 Hel 89 H+l SapurV1A.0070s0640.4.p 139 HSL 141 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-12 | 66 | 141 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.0E-31 | 273 | 365 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.09 | 550 | 586 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.9E-11 | 550 | 584 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.3E-8 | 561 | 588 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 861 aa Download sequence Send to blast |
MDGEVVDVEV REGNNHLAVI ANPNETEKQN TTENYMEAAV RNQDDDGIAL PHVGMEFESE 60 DAAKTFYDTY AKRMGFSTHV GQFTRSKPDG PIVTWEFACS KEVFKRKNIE SCNAVLRIVR 120 KDSHSDNWVV TKFVEEHNHS LGTPGKVLRP RKHFSGASKN MAETLDATND VYVSTDRSHV 180 THEPNRVRSA IPVEPNNLVR NEASLPATYF RAPGGRKTLG RDAHSLLNYF KKMQAENPGF 240 YYAIQLDDEN RMTNVFWADA RSRIAYSHFG DAVVFDTMYR PNQYQVPFAP FTGVNHHGQM 300 VLFGCALLLD ESESSFTWLF RTWLSAMNGQ PPVSFTTDQD RAIHMAVAQV FPETRHCICK 360 WHILREGQDR LAHIYLAHPS FYGELYSCIN SSETIEDFES SWASLLEKFD LQRIEWLQAV 420 YNARQQWAPV YFRNTFFAAL SSNHGISSFF DGYVNQQTTI PLFFKQYELV LEHSLEKEIE 480 ADYDTICTTP VLKTPSPMEQ QAANLYTKKV FAKFQEELVE TFVYTANKIE RDGMATKYRV 540 AKYEHDDKAY IVTLNISEMQ ASCSCQMFEY CGILCRHILT VFTVTNILTL PSHYILNRWT 600 RNAKSWIGSE EHSADSQGLD TLTSRFNNLC LEAIRYAEEG AIATETYNAA ISNLKEGGKK 660 IASVKKSVAK VTPYRSNFSG NSQEENNKKT PTAPHEMIPS LWPWQDAMPP RFNLNDGGVP 720 CADLNQPSMA PVSIHHDGVP TDNSVVLTYF KSMTWVIENK TSTPAGKVAV INLKMQDYGK 780 NPSGETEVQF RLTKVTLEPM LRSMAYISQQ LSTPANRVAV INLKLQDTKT TTGETEVKFQ 840 VSRDTLGSML RSMAYIREQL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0070s0640.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011032969.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_011032970.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A2K1Z9V4 | 0.0 | A0A2K1Z9V4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s01240.3 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0070s0640.4.p |
Publications ? help Back to Top | |||
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