PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0070s0640.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 861aa MW: 97633 Da PI: 6.4819

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0070s0640.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.2	1.7e-15	66	141	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHn 86 fY++YAk++GFs+ + + ++sk +g i++ +f Cske +++++ ++ C+a l++ +++ +++w+vtk+++eHn SapurV1A.0070s0640.3.p 66 FYDTYAKRMGFSTHVGQFTRSKPDGPIVTWEFACSKEVFKRKNIES--------------CNAVLRIVRKDshSDNWVVTKFVEEHN 138 9*************************************998877..............**98887789*********** PP FAR1 87 Hel 89 H+l SapurV1A.0070s0640.3.p 139 HSL 141 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-12	66	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.0E-31	273	365	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.09	550	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.9E-11	550	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.3E-8	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence Send to blast
MDGEVVDVEV REGNNHLAVI ANPNETEKQN TTENYMEAAV RNQDDDGIAL PHVGMEFESE 60 DAAKTFYDTY AKRMGFSTHV GQFTRSKPDG PIVTWEFACS KEVFKRKNIE SCNAVLRIVR 120 KDSHSDNWVV TKFVEEHNHS LGTPGKVLRP RKHFSGASKN MAETLDATND VYVSTDRSHV 180 THEPNRVRSA IPVEPNNLVR NEASLPATYF RAPGGRKTLG RDAHSLLNYF KKMQAENPGF 240 YYAIQLDDEN RMTNVFWADA RSRIAYSHFG DAVVFDTMYR PNQYQVPFAP FTGVNHHGQM 300 VLFGCALLLD ESESSFTWLF RTWLSAMNGQ PPVSFTTDQD RAIHMAVAQV FPETRHCICK 360 WHILREGQDR LAHIYLAHPS FYGELYSCIN SSETIEDFES SWASLLEKFD LQRIEWLQAV 420 YNARQQWAPV YFRNTFFAAL SSNHGISSFF DGYVNQQTTI PLFFKQYELV LEHSLEKEIE 480 ADYDTICTTP VLKTPSPMEQ QAANLYTKKV FAKFQEELVE TFVYTANKIE RDGMATKYRV 540 AKYEHDDKAY IVTLNISEMQ ASCSCQMFEY CGILCRHILT VFTVTNILTL PSHYILNRWT 600 RNAKSWIGSE EHSADSQGLD TLTSRFNNLC LEAIRYAEEG AIATETYNAA ISNLKEGGKK 660 IASVKKSVAK VTPYRSNFSG NSQEENNKKT PTAPHEMIPS LWPWQDAMPP RFNLNDGGVP 720 CADLNQPSMA PVSIHHDGVP TDNSVVLTYF KSMTWVIENK TSTPAGKVAV INLKMQDYGK 780 NPSGETEVQF RLTKVTLEPM LRSMAYISQQ LSTPANRVAV INLKLQDTKT TTGETEVKFQ 840 VSRDTLGSML RSMAYIREQL *

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence Send to blast

MDGEVVDVEV REGNNHLAVI ANPNETEKQN TTENYMEAAV RNQDDDGIAL PHVGMEFESE  60
DAAKTFYDTY AKRMGFSTHV GQFTRSKPDG PIVTWEFACS KEVFKRKNIE SCNAVLRIVR  120
KDSHSDNWVV TKFVEEHNHS LGTPGKVLRP RKHFSGASKN MAETLDATND VYVSTDRSHV  180
THEPNRVRSA IPVEPNNLVR NEASLPATYF RAPGGRKTLG RDAHSLLNYF KKMQAENPGF  240
YYAIQLDDEN RMTNVFWADA RSRIAYSHFG DAVVFDTMYR PNQYQVPFAP FTGVNHHGQM  300
VLFGCALLLD ESESSFTWLF RTWLSAMNGQ PPVSFTTDQD RAIHMAVAQV FPETRHCICK  360
WHILREGQDR LAHIYLAHPS FYGELYSCIN SSETIEDFES SWASLLEKFD LQRIEWLQAV  420
YNARQQWAPV YFRNTFFAAL SSNHGISSFF DGYVNQQTTI PLFFKQYELV LEHSLEKEIE  480
ADYDTICTTP VLKTPSPMEQ QAANLYTKKV FAKFQEELVE TFVYTANKIE RDGMATKYRV  540
AKYEHDDKAY IVTLNISEMQ ASCSCQMFEY CGILCRHILT VFTVTNILTL PSHYILNRWT  600
RNAKSWIGSE EHSADSQGLD TLTSRFNNLC LEAIRYAEEG AIATETYNAA ISNLKEGGKK  660
IASVKKSVAK VTPYRSNFSG NSQEENNKKT PTAPHEMIPS LWPWQDAMPP RFNLNDGGVP  720
CADLNQPSMA PVSIHHDGVP TDNSVVLTYF KSMTWVIENK TSTPAGKVAV INLKMQDYGK  780
NPSGETEVQF RLTKVTLEPM LRSMAYISQQ LSTPANRVAV INLKLQDTKT TTGETEVKFQ  840
VSRDTLGSML RSMAYIREQL *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0070s0640.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011032969.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_011032970.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2K1Z9V4	0.0	A0A2K1Z9V4_POPTR; Uncharacterized protein
STRING	POPTR_0008s01240.3	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	SapurV1A.0070s0640.3.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]