PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0068s0720.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 246aa    MW: 27558.7 Da    PI: 9.9241
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0068s0720.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.4e-1171123155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             ++++h  +Er+RR+++    + Lr llP  +    +K s ++   +Av+YIk+Lq
  SapurV1A.0068s0720.2.p  71 KKMMHRVIERQRRQEMAIHHASLRALLPLEF--IRGKRSISDHMIEAVNYIKYLQ 123
                             6899*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.96E-868127No hitNo description
PROSITE profilePS5088812.30370122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-871139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-871123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1171138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MFPLHQGGEL CFKISPSPHQ QDNIPPDLIP AQYAEIHGSD MTKSMEKGRR RNLTSMDSNE  60
VARDNKNSSM KKMMHRVIER QRRQEMAIHH ASLRALLPLE FIRGKRSISD HMIEAVNYIK  120
YLQKKIREIS AKRDGLKKLS NSSFVASPSG SSNKYSSSSL ALHPYPGGIE ITFVSDLMGR  180
DLPLSKVLQV LVEEGISVIN CVSTKVNERL FHSVQTEVND PTCLNLSELR QKLTLLVSST  240
SDLSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0068s0720.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041656.11e-147PREDICTED: transcription factor bHLH118-like
TrEMBLB9ICZ31e-138B9ICZ3_POPTR; Uncharacterized protein
STRINGPOPTR_0015s14070.11e-139(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-40bHLH family protein