PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0061s0470.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 28080.9 Da PI: 8.3806 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 67 | 113 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+++E+rRRdri + Lr+l+Pk+ +K++Ka+ L A++++k+L SapurV1A.0061s0470.1.p 67 RSHSQAEKRRRDRISAQLGILRKLIPKS-----EKMDKAALLGSAIDHVKNL 113 78*************************8.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.894 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.33E-13 | 65 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-10 | 67 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-14 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.38E-10 | 67 | 116 | No hit | No description |
SMART | SM00353 | 6.8E-11 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.02E-6 | 160 | 196 | No hit | No description |
SuperFamily | SSF55021 | 3.62E-5 | 160 | 226 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.6E-5 | 160 | 223 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MENHHFPCWP AAPAEANWAQ TSAAVYDESF FIPDPSHASA NFQVNGFSSW AIPIQEASED 60 KAASSSRSHS QAEKRRRDRI SAQLGILRKL IPKSEKMDKA ALLGSAIDHV KNLKQKATEI 120 SRTFTVPSEV DEVTVDCDVS QVTTPPSTTK DKDITFIRAS VCCDDRPELF SELITVLKGL 180 GLAIVRADIA SVGGRVKSIL VLCSECSEEG SVSISTIKKS LNLVLSRIAS PSMPSNYRIR 240 SKRQRFFLPP RFSEQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0061s0470.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311240.1 | 1e-159 | transcription factor bHLH51 isoform X1 | ||||
Refseq | XP_024463294.1 | 1e-159 | transcription factor bHLH51 isoform X1 | ||||
Refseq | XP_024463295.1 | 1e-159 | transcription factor bHLH51 isoform X1 | ||||
TrEMBL | B9HHS9 | 1e-157 | B9HHS9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s07090.1 | 1e-158 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5796 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 6e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0061s0470.1.p |