PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0061s0350.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 672aa    MW: 73384.8 Da    PI: 6.5128
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0061s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07266286526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C+ f++ GtC+ Gd C +aHg
  SapurV1A.0061s0350.1.p 266 PCPEFRK-GTCQKGDYCEYAHG 286
                             8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.2E-1250180IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.34E-1170156IPR020683Ankyrin repeat-containing domain
SMARTSM002480.002776106IPR002110Ankyrin repeat
PROSITE profilePS5029712.24976151IPR020683Ankyrin repeat-containing domain
PfamPF127961.6E-776145IPR020683Ankyrin repeat-containing domain
CDDcd002043.72E-1178175No hitNo description
SMARTSM0024846111143IPR002110Ankyrin repeat
PROSITE profilePS5010312.699261288IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4261287IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-5266286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4266289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4293325IPR000571Zinc finger, CCCH-type
SMARTSM0035637296319IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869296320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MCTGSRSDPP PSNLIMEDKS YSQKDSLFYK CSVLLELSAS DDLAGFKTEV EQKGLDIDEA  60
SYWYGRRNGL KKMGFEERTP LMIAALFGSI HVLKYIIETG KVKVNKACGS DRVTALHCAV  120
AGCADSSVGD VKLLLDASAD PNSVDGNGNK PGDLFAPSSK LMCNSRKKLI ELLLKGESLS  180
EDEEEKLIIM PQVAKEGIEK KEYPLDVTLP DINDGIYGTD EFRMYSFKVK PCSRAYSHDW  240
TECPFVHPGE NARRRDPKKY PYSCVPCPEF RKGTCQKGDY CEYAHGVLES WLHPAQYRTR  300
LCKDETGCAR KVCFFAHKPE ELRPVYAATG SAMPSPRSTS SAVDMATLSS LALGSSSLSL  360
PGTSTPPMSP LAAASSSPKS GGLWQNKVSL TPPALQQPGS RLKTAFSARD LDLEMELLGL  420
ESYSSQLQQQ QQHLRDEMSG LSSPTHWSNR MADLKPTTLD DVFGSLDPSI MSPMQGVTQL  480
QSPNGLQIRQ NMNQLRSSYP VANLSSSPAR NPTSYGFDTS AAVAAAVMNS RSSAFAKRSQ  540
SFIDRGAVPN RFGLTAAANS APMMSSNLSD WNSPNGKLDW GIQGDELNKL KKSASFGFRS  600
NNNLATTAAS LTASHINEPD VSWVNSLVKD VPPAGSTFFG DEKQYRLREG VPESLSPWME  660
QMYIEQEQMV A*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0061s0350.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466053.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2K1YWF00.0A0A2K1YWF0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s06940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein