PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0060s0600.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 572aa    MW: 61589.1 Da    PI: 5.9037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0060s0600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09382430355
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  SapurV1A.0060s0600.3.p 382 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 430
                             58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-17377447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-11377434No hitNo description
PROSITE profilePS5088815.485379429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16380446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6382430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10385435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MDMRDKDKYE LEESNNNPIN YHSPGGMPVD RRFNSTSIPN SSLGLIPTDN QMSVCRGDLA  60
GAASCSSASV IDSFGPSMWE HPTNSQNLVF CDVSVQNIAS SSNTVGIGKG VPASLRNGID  120
RTLEMGWNPP NSMLKGGFFL PNASGMLPQS LSQFPADSAF IERAARFSCF NGESFNDMVN  180
PFGAPESMGL FSRGGGMMQG TGENFMGSGM KSVSGGQAPK NFMKAVEASK DVSMSVNHMA  240
TNKGSPLKNE TKSDSLARSR DEAKQGMVGS GNASDEAEFS GGGGQDEPSM LEGNCRELSA  300
KSLDSKKRKR NGQDAECDQA KGTPQSAEPA KGSPETQPKG DQKPNSTTSK DPGKQGKQGS  360
LGSDQPNEEY IHIRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCS KVTGKAVMLD  420
EIINYVQSLQ RQVEFLSMKL ATVNPRLDLN IEGLLAKDVF SPKMLQLHAV PPSSLAFSLE  480
MPMAYPPSLP SQPGLIPTAF PGMDSHSDII RRTINSQLTP MTAGFKEPAQ LPNVWDDELR  540
NVVQMSYGTS TPHDSQDVNE PLPPDHLKVE L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0060s0600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468110.0EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463643.10.0transcription factor bHLH49 isoform X1
TrEMBLA0A2K1ZFJ70.0A0A2K1ZFJ7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-136bHLH family protein