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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0060s0600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 573aa MW: 61753.8 Da PI: 7.9611 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 7.2e-09 | 382 | 430 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq SapurV1A.0060s0600.1.p 382 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 430 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.16E-17 | 377 | 447 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.40E-11 | 377 | 434 | No hit | No description |
PROSITE profile | PS50888 | 15.485 | 379 | 429 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 380 | 446 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-6 | 382 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 385 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MDMRDKDKYE LEESNNNPIN YHSPGGMPVD RRFNSTSIPN SSLGLIPTDN QMSVCRGDLA 60 GAASCSSASV IDSFGPSMWE HPTNSQNLVF CDVSVQNIAS SSNTVGIGKG VPASLRNGID 120 RTLEMGWNPP NSMLKGGFFL PNASGMLPQS LSQFPADSAF IERAARFSCF NGESFNDMVN 180 PFGAPESMGL FSRGGGMMQG TGENFMGSGM KSVSGGQAPK NFMKAVEASK DVSMSVNHMA 240 TNKGSPLKNE TKSDSLARSR DEAKQGMVGS GNASDEAEFS GGGGQDEPSM LEGNCRELSA 300 KSLDSKKRKR NGQDAECDQA KGTPQSAEPA KGSPETQPKG DQKPNSTTSK DPGKQGKQGS 360 LGSDQPNEEY IHIRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCS KVTGKAVMLD 420 EIINYVQSLQ RQVEFLSMKL ATVNPRLDLN IEGLLAKDVF SPKMLQLHAV PPSSLAFSLE 480 MPMAYPPSLP SQPGLIPTAF PGMDSHSDII RRTINSQLTP MTAGFKEPAQ VHLYLDFYLM 540 ITLLLVFLKN KKINSGIVVH GARNACMKDV CR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0060s0600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146811 | 0.0 | EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024463643.1 | 0.0 | transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_024463644.1 | 0.0 | transcription factor bHLH49 isoform X2 | ||||
TrEMBL | A0A2K1ZFJ7 | 0.0 | A0A2K1ZFJ7_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A2K1ZFK0 | 0.0 | A0A2K1ZFK0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s11240.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7249 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-131 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0060s0600.1.p |