PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0059s0390.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 473aa    MW: 53131.8 Da    PI: 7.1535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0059s0390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.4e-12296341454
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             +h e Er+RR+r+N++f +Lr+++P+       K++ a+ L  Av YIk+L
  SapurV1A.0059s0390.1.p 296 NHVETERQRRERLNHRFYTLRSVVPNV-----SKMDRASLLADAVTYIKEL 341
                             799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.7E-4425197IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.36E-17290356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-13291345No hitNo description
PROSITE profilePS5088816.863292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-16296356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEEILSPSSS SVSLISFAQE TSSTLQQRLQ LFLHSRPEGW VYSIFWQASK DTGGRPVLSW  60
GDGHFRGNKK YASKDSNKQN HPKFGFDLER KSLFNEDMDM DRLVDGDVAE WYYTVSVTRA  120
FAVGDGILGR AFISGASIWL AGDHELQFYE CERVTEARMH GIQTLVCVST PSGVLELGSP  180
VLISEDWSLV QLARSIFGAD INANSVPKQS RHESQPQIPN CNVSNFLDIG LFSSPQTDRA  240
ASLENKKESD PQKEVFGRGR SSSDSGRSDS DVRFPEYHIG FKKRGRKPSG KESPLNHVET  300
ERQRRERLNH RFYTLRSVVP NVSKMDRASL LADAVTYIKE LKSKVNELET NLQVVSKKSK  360
ISSCTNIHDN RSTNTSTMVN YLRSPPNYIS NNPMEVDVKI LGSEGLIRVQ SPDINYPAAR  420
LMDALRDLEF PVHHLSVTRV EELLLQDVVI RIADGLVTEE AMRAAIFQRM QN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-28241978192Transcription factor MYC3
4rqw_B9e-28241978192Transcription factor MYC3
4rs9_A9e-28241978192Transcription factor MYC3
4yz6_A9e-28241978192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301306RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0059s0390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303693.20.0transcription factor MYC2
TrEMBLB9GY360.0B9GY36_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-62bHLH family protein