PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0059s0150.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29078.8 Da PI: 8.4885 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl SapurV1A.0059s0150.1.p 14 RGPWTSREDTLLINYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 7.1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l SapurV1A.0059s0150.1.p 67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.453 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.34E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.66E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.967 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGRAPCCSKV GLQRGPWTSR EDTLLINYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNS HLGKRVKNSK 120 AGNNSHRIRK RKQRELDNEI GEAAAAKIKI HLPKATRVSP SSVAKNININ IQRMMGSSSS 180 HENMDDYANW GISGLELASN DGEAWAFNGE EFAGLVHDHD STCPSSLPDD IMLGDIFEEY 240 QELLKQDDHG QFDSLIIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0059s0150.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002304570.1 | 1e-158 | transcription factor MYB4 | ||||
TrEMBL | B9GXU6 | 1e-156 | B9GXU6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s14420.1 | 1e-157 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-66 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0059s0150.1.p |