PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0056s0470.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 259aa    MW: 28987.8 Da    PI: 9.1123
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0056s0470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.91.8e-20179213135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++Cg+ kTp+WR gpdg+ktLCnaCG++y++ +l
  SapurV1A.0056s0470.1.p 179 CQHCGVEKTPQWRAGPDGPKTLCNACGVRYKSGRL 213
                             *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-18173223IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.637173209IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-15175236No hitNo description
Gene3DG3DSA:3.30.50.101.7E-15177211IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.57E-15178226No hitNo description
PfamPF003202.9E-18179213IPR000679Zinc finger, GATA-type
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MESLDTAAGF MVDDLLDFGS DIGEEHDDEE HQNNNRKPRK ALPSLNPNAL APVSFNVLEH  60
TVLPELAEED LEWLSNKDAF PAVETCFGVL PEEPGSIPKH HSPVSVLENS TTSSTSISGN  120
SCNGSIIMSY CSLRVPVKAR SKRRHRRPRE IRDQERWWSR ENITRRKPAV SVAKMGRKCQ  180
HCGVEKTPQW RAGPDGPKTL CNACGVRYKS GRLVPEYRPA NSPTFSSKLH SNSHRKVVEM  240
RRQKQMMGSF VVKPMDKG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0056s0470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494820.0AC149482.1 Populus trichocarpa clone Pop1-69G3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303808.21e-151GATA transcription factor 1
SwissprotQ8LAU94e-54GATA1_ARATH; GATA transcription factor 1
TrEMBLB9H0031e-150B9H003_POPTR; Uncharacterized protein
STRINGPOPTR_0003s17340.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-53GATA transcription factor 1