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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0054s0630.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | CO-like | ||||||||
Protein Properties | Length: 415aa MW: 45133 Da PI: 4.8336 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.3 | 2.4e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C+ ++e++ +C+++ lC +C + H+ H+ SapurV1A.0054s0630.1.p 4 VCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalskrHS 43 6*****************************5566666676 PP | |||||||
2 | zf-B_box | 24.3 | 6.2e-08 | 44 | 89 | 2 | 41 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 ++ C+++++++++ C + + lC++C +H g H++++ SapurV1A.0054s0630.1.p 44 RNLLCERCNSQPAIVRCAEERISLCQNCDWIGH-GtstsastHRRQT 89 6789**************************99*.5477888887765 PP | |||||||
3 | CCT | 63.3 | 7.5e-22 | 357 | 400 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ SapurV1A.0054s0630.1.p 357 RSDAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 400 889**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.584 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.8E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.05E-6 | 4 | 44 | No hit | No description |
PROSITE profile | PS50119 | 8.944 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.90E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 3.1 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.9E-16 | 357 | 399 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.368 | 357 | 399 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MGYVCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSK RHSRNLLCER CNSQPAIVRC 60 AEERISLCQN CDWIGHGTST SASTHRRQTI SCYSGCPSAS ELSSIWSFVL DFPSRGESTC 120 EQELGLMSIA ENSTTNSWGE NTIDQNASGA VEVNDRNEIA KSGVWHGSSS IPESSSLPNN 180 PDQPTGSANT SLPKLYCPGT KCPVPYDDAN LYEEFNMDEM DLSLENYEEL FGVTLNNSEE 240 LLENGGIDSL FGTKDMSGAD SNCQGAVAAE VSSVGLVNAI QPASSNAASA DSMMSNKTEP 300 ILCLTEKQGH SNLSFSGLNV ESSAADYQDC GASSMLLMGE PPWCPQCPES PFSSANRSDA 360 VMRYKEKKKT RKFEKKVRYA SRKARADVRR RVKGRFVKAG DAYDYDPLSQ TRSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0054s0630.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214995 | 1e-174 | AC214995.1 Populus trichocarpa clone POP004-B08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441090.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 1e-149 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A2K1XX94 | 0.0 | A0A2K1XX94_POPTR; Uncharacterized protein | ||||
STRING | EOX93573 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-118 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0054s0630.1.p |