PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0054s0320.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 420aa MW: 47817 Da PI: 5.9444 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.2 | 7.9e-13 | 122 | 162 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W t+E+ ll+++++++G g+W+ +++++g +++ qc+++++ SapurV1A.0054s0320.4.p 122 WNTDEEILLLEGIEMYGFGNWTEVSEHVG-TKSKSQCIDHYN 162 *****************************.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF025024 | 3.3E-118 | 51 | 419 | IPR016827 | Transcriptional adaptor 2 |
SMART | SM00291 | 2.0E-9 | 58 | 103 | IPR000433 | Zinc finger, ZZ-type |
PROSITE profile | PS50135 | 10.812 | 62 | 105 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02335 | 8.50E-26 | 62 | 110 | No hit | No description |
SuperFamily | SSF57850 | 3.53E-14 | 62 | 125 | No hit | No description |
Pfam | PF00569 | 7.3E-10 | 62 | 102 | IPR000433 | Zinc finger, ZZ-type |
PROSITE pattern | PS01357 | 0 | 64 | 91 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 1.05E-12 | 114 | 168 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 20.448 | 117 | 169 | IPR017884 | SANT domain |
SMART | SM00717 | 4.8E-11 | 118 | 167 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 121 | 162 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.39E-11 | 122 | 162 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-8 | 122 | 164 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0016573 | Biological Process | histone acetylation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MGRSRGRPPS SGTSAAAAAA SDDPNNSRSS KKRKKTTSNV GRIEIAFPAV YQETSQGKPA 60 LYHCNYCHKD ISGMVRIKCA VCPDFDLCVE CFSVGAEVTP HKSNHLYRVM DNLSFPLFCP 120 DWNTDEEILL LEGIEMYGFG NWTEVSEHVG TKSKSQCIDH YNAVYMDSPC FPLPDMSHVM 180 GKTREELLAM AKGNVEMKKE FSAFEELTLN QESPFSVKIK SDASKKEDLA SHSSSVLNAE 240 LSTHMGSSSG NTFSDAVKKA SNEAQVKDKI KVEEPLSDRS IGEKKPRLCG EEGPSMTELS 300 GYNVKRQEFE IEYDNDAEQL LADMEFKDTD TDAELDMKLR VLRVYSKRLD ERKRRKDFIL 360 ERNLFYHDAF EKNLSPEEKE IYQRYKVFMR FHTKEEHEEL MKTVIEDHRI MKRIQDLQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw3_E | 2e-37 | 62 | 177 | 5 | 120 | Transcriptional adapter 2 |
6cw3_G | 2e-37 | 62 | 177 | 5 | 120 | Transcriptional adapter 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 34 | KKRKK |
2 | 351 | 356 | RKRRKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0054s0320.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441566.1 | 0.0 | transcriptional adapter ADA2a isoform X1 | ||||
Swissprot | Q75LL6 | 1e-165 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | A0A2K1XX21 | 0.0 | A0A2K1XX21_POPTR; Transcriptional adapter | ||||
STRING | POPTR_0014s16430.1 | 0.0 | (Populus trichocarpa) |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0054s0320.4.p |
Publications ? help Back to Top | |||
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