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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0053s0180.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARF | ||||||||
Protein Properties | Length: 591aa MW: 65865.9 Da PI: 8.4175 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33 | 1.1e-10 | 180 | 222 | 55 | 99 |
ETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 55 ksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++r+++t+GW+ Fv++++L +gD+++F + +++e++v+v+r+ SapurV1A.0053s0180.1.p 180 QPKRHLITSGWSTFVSSKRLVAGDSFIFL--RGECGEFRVGVRRA 222 6789*************************..4499999****996 PP | |||||||
2 | Auxin_resp | 97.3 | 2.2e-32 | 247 | 329 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+s+F+++++P++s++eFv+++++++k+ ++ +s+G Rf+m fe++++ e+r+ Gtvv +d+d vrWpnS+Wr Lk SapurV1A.0053s0180.1.p 247 ASHAISTGSMFTIYFHPWTSPAEFVIPYDQYMKSAEIDYSAGIRFRMLFEGQECMEQRFKGTVVVSEDVDLVRWPNSEWRILK 329 789*****************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-5 | 143 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-16 | 146 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.35E-11 | 146 | 221 | No hit | No description |
SMART | SM01019 | 0.0016 | 148 | 223 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-13 | 179 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.7E-8 | 180 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.67 | 183 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.9E-30 | 247 | 329 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MGKKRSVAGE ARTSRSHEVA VLKTTKCLNN GLPPRDPQYD PHTELWHACA GPLVYVPRVG 60 DKVFYFPQGH MEQVAARMNE DCKREMPIYD LPYKILCKAV HVELKAEAGT DEVFACITLL 120 PAAEEDELSS NKAGNSLPLH RKTCARSFTK KLTSSDTKTH GGFSVPKRHA DQCYHVVPSQ 180 PKRHLITSGW STFVSSKRLV AGDSFIFLRG ECGEFRVGVR RAMKLEKNLL ANVLSSHSMQ 240 LGILSSASHA ISTGSMFTIY FHPWTSPAEF VIPYDQYMKS AEIDYSAGIR FRMLFEGQEC 300 MEQRFKGTVV VSEDVDLVRW PNSEWRILKV KWDSASEPFM HQERVSPWNI EPIEPIRKEH 360 ASLLHLQKKA CMEDKSLPRF LISVKEVSHL TSPLNPDWNY SQIGQDNQLQ FWIRGPIYPC 420 PSNTVSFPGG NIARFGIPNS RYSTFNSHGV HDNAVGSTSL SVPNVSCNSG SQKWRGLELK 480 HANEVPLAAP HRYMLFGVNL VSNSPELPSP QVATSAVHES HNYVPVTSQS SVSEPSKSTS 540 GVNSEKNNAR TVALLLFGVA QRSSNMELYL EDLLISHNSM GTMNSFVSLT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-110 | 44 | 353 | 22 | 355 | Auxin response factor 1 |
4ldw_A | 1e-110 | 44 | 353 | 22 | 355 | Auxin response factor 1 |
4ldw_B | 1e-110 | 44 | 353 | 22 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0053s0180.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440769.1 | 0.0 | auxin response factor 2B | ||||
Swissprot | Q94JM3 | 1e-127 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A2K1XV50 | 0.0 | A0A2K1XV50_POPTR; Auxin response factor | ||||
STRING | POPTR_0014s12980.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13105 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-130 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0053s0180.1.p |