PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0050s0720.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 368aa    MW: 40540.2 Da    PI: 8.3978
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0050s0720.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +grWT+eEde l +++   G g+Wk+ ++  g+ R++k+c++rw +yl
  SapurV1A.0050s0720.1.p 14 KGRWTAEEDEALTKYILANGEGSWKSLPKNAGLLRCGKSCRLRWINYL 61
                            79******************************99************97 PP
2Myb_DNA-binding50.16.5e-1667112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+ T+eE+e +v++ + lG++ W++Ia+ ++ gRt++++k++w+++l
  SapurV1A.0050s0720.1.p  67 RGNITKEEEETIVKLRAALGNR-WSLIAAQLP-GRTDNEIKNYWNSHL 112
                             7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.954961IPR017930Myb domain
SuperFamilySSF466891.26E-2611108IPR009057Homeodomain-like
SMARTSM007171.1E-101363IPR001005SANT/Myb domain
PfamPF002493.5E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-201568IPR009057Homeodomain-like
CDDcd001677.40E-81661No hitNo description
PROSITE profilePS5129423.82262116IPR017930Myb domain
SMARTSM007171.6E-1566114IPR001005SANT/Myb domain
PfamPF002496.6E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2469116IPR009057Homeodomain-like
CDDcd001673.95E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGRAPCCEKV GLRKGRWTAE EDEALTKYIL ANGEGSWKSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TKEEEETIVK LRAALGNRWS LIAAQLPGRT DNEIKNYWNS HLSRKMYSFK  120
QCRNDDSLSG IMNITNVAAG PYKGRGGRTS RSSMKKHQAT LMSLGKPPKS PKATAKEVTE  180
PASEETAAIS LKGANTPLKS LPTEGPQEEP GSRRNLGAQV QESCVDIAER IGAAGKSHCP  240
VNGEKETEDL GPYEWLDSEI KRLEYALRSQ AADPCGRNEV ATSETANETP SLSKERGDHN  300
GEMGRPKRVA VHYQKRQSSS SNGCSSNEDS NGEWCNSFSP VNSRFEEEEW FDWDWTSAGD  360
LGGRGLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-211211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0050s0720.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316017.20.0transcription factor MYB111
TrEMBLB9HWW80.0B9HWW8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-74myb domain protein 111