PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0049s0450.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 844aa MW: 92240.3 Da PI: 6.0531 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.3e-18 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ SapurV1A.0049s0450.1.p 27 KYVRYTSEQVEALERVYAECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 85 5679*****************************************************97 PP | |||||||
2 | START | 157.2 | 1.3e-49 | 165 | 372 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v +++ ++e+l+d++ W ++++ e+ +g SapurV1A.0049s0450.1.p 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCSGVAARACGLVSLEPP-KLAEILKDRQSWFRDCRNLEVFTMFPTG 250 7899******************************************************.6666666666*************99999 PP ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169 g+++l +++ +a+++l+p Rdf+++Ry+ +l+ g++v++++S++ p+ +++vRae+lpSg+li+p+++g+s +++v+h SapurV1A.0049s0450.1.p 251 ngGTIELLYSQIYAPTTLAPaRDFWTLRYTTSLENGSLVVCERSLSGSGAGPNaaaAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDH 337 99********************************************99999998999****************************** PP EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqc 204 +l++++++++lr+l++s+ a ++k + +l++ + SapurV1A.0049s0450.1.p 338 LNLQAWSVPEVLRPLYESSKAVAQKLTIMALRYVR 372 *************************9998888766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-19 | 9 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.467 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-15 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.82E-16 | 25 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.17E-16 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 5.4E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 3.68E-6 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 25.755 | 155 | 383 | IPR002913 | START domain |
CDD | cd08875 | 3.07E-70 | 159 | 375 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 8.2E-18 | 164 | 348 | IPR023393 | START-like domain |
SMART | SM00234 | 6.2E-42 | 164 | 374 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.06E-31 | 164 | 353 | No hit | No description |
Pfam | PF01852 | 7.9E-47 | 165 | 372 | IPR002913 | START domain |
Pfam | PF08670 | 3.3E-50 | 699 | 842 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 844 aa Download sequence Send to blast |
MAMAVAPQHR ESSSSGSLDK HLTDNGKYVR YTSEQVEALE RVYAECPKPS SLRRQQLIRE 60 CPILANIEPK QIKVWFQNRR CREKQRKESS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL 120 VCENGFMQQQ LQTAPAAADA SCDSAVTTPP HSLRDAINPA GLLSIAEETL AEFLSKATGT 180 AVDWVQMPGM KPGPDSVGIF AISQRCSGVA ARACGLVSLE PPKLAEILKD RQSWFRDCRN 240 LEVFTMFPTG NGGTIELLYS QIYAPTTLAP ARDFWTLRYT TSLENGSLVV CERSLSGSGA 300 GPNAAAAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL QAWSVPEVLR PLYESSKAVA 360 QKLTIMALRY VRQIAHETSG EVVYGLGRQP AVLRTFSQRL SRGFNDAING FNDDGWSLMN 420 SDGAEDVIIA VNTTKNLISA NTPAQSLSFL GGILCAKASM LLQNVPPAVL VRFLREHRSE 480 WADFSVDAYS AASLKAGSYA YPGMRSMRFT GSQIIMPLGH TIEQEELLEV IRLEGHSFAQ 540 EDAFVSRDIH LLQICSGIDE NAVGACSELV FAPIDEMFPD DAPLLPSGFR VIPLESKTKD 600 VQEALTTNRT LDLTSSLEVG LATNHASVDG SSCHLRSVLT IAFQFPFESN LQDNVATMAR 660 QYVRSVISSV QRVATAISPS GLNPALGPKL SAGSPEALTL AHWICQSYCY HLGAELLRSD 720 SVGGDSVLKH LWHHPDAILC CSLEALPVFT FANQAGLDML ETTLVALQDI TLDKIFDESG 780 RKALFTDFAK LMQQGFACLP AGICMSTMGR NVSYEQAVAW KVLAAEDNTV HCIAFSFVNW 840 SFL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0049s0450.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY497772 | 0.0 | AY497772.1 Populus alba x Populus tremula class III HD-Zip protein (HB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010050.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein REVOLUTA-like isoform X1 | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | A0A3N7FHA2 | 0.0 | A0A3N7FHA2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s01990.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6633 | 31 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0049s0450.1.p |