PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0049s0270.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TALE | ||||||||
Protein Properties | Length: 810aa MW: 89041.4 Da PI: 6.0553 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27 | 7.9e-09 | 620 | 657 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ qV++WF N R + SapurV1A.0049s0270.1.p 620 FEHflHPYPTDTDKHMLATQTGLSRYQVSNWFINARVR 657 554458******************************88 PP | |||||||
2 | BELL | 71.9 | 1.1e-23 | 481 | 549 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e q+ kakLl l+eeV +rYkqy++q+++ +s Fe vagl +a+ Y+s+ k +S +F+++k ai++q+ SapurV1A.0049s0270.1.p 481 EYQQMKAKLLYLQEEVLRRYKQYHQQMEMAASFFESVAGLSAATQYISMTIKVVSGNFKSIKHAISDQL 549 67999*************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.6E-24 | 384 | 547 | IPR006563 | POX domain |
Pfam | PF07526 | 3.1E-32 | 390 | 546 | IPR006563 | POX domain |
SMART | SM00389 | 2.8E-8 | 601 | 665 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.47E-11 | 601 | 662 | No hit | No description |
SuperFamily | SSF46689 | 1.24E-16 | 603 | 667 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.2E-27 | 604 | 665 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-17 | 618 | 657 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 11.467 | 620 | 661 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 810 aa Download sequence Send to blast |
METKSFQPET HVAQRSRRDK LRSLTSVQHL EDFGNDLDQL AVDPVLTPDL VHVRHVRNGN 60 MLYGPTFLSS AMLSFATSSD VLSAQRGAMV DQELGPAHLT SPIAAENSSF TNMTHPVLSN 120 LNASPSASNG DAQGRGNWTK LGSEQGYGST VDFAGGSVAG ERNQNQNQKL MCAVEVLSNN 180 ARLTDITYTQ YLEPSYNEYR DNDLQSSLVD PSDEFSSQDN QKQFRERQFT THPLHQNTLQ 240 DVVTSGLVGR TQEIIPHPST ENLSSTLHFN DANAWIRRAS ENSRQWTGEL GLIIEESSQE 300 LMTNTQGLSL SLSSNQSSKV NETQFGEAYE SECLQSKKGL SKASYTCPLP RPSILSKGCG 360 KSLHDLPEDA TSILGNASPL GPFTGYATNL SSSRFLKPAQ ELMDELCGVK GLGLVRTSEL 420 PRRIGGASPP ASRDAVNEAD TGDKANDDTN LGASPLTSRR SNEEIGHCGG GSSSSESYMP 480 EYQQMKAKLL YLQEEVLRRY KQYHQQMEMA ASFFESVAGL SAATQYISMT IKVVSGNFKS 540 IKHAISDQLK HVTKALGENL FSPSPFGSST AGSLRYKDRS FQKSNSGGSN VGSLEHQEHI 600 WRPQRGLPER AVVILRAWLF EHFLHPYPTD TDKHMLATQT GLSRYQVSNW FINARVRLWK 660 PMVEEIHSLE TKGLLENNRS SGKNDGNSAE GASQPDGDHS KELGTSHVPG IQLECSRNIG 720 SSGGGRDELD AEEWDQEKRS RVGFQAPLRA DRSLMDFVLY QKPASENGDL GAVSLTLGLR 780 HGAENAQHQQ LQHSEENQLG RQFWRPDDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 5e-16 | 607 | 664 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 5e-16 | 607 | 664 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0049s0270.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464857.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Refseq | XP_024464858.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A2K1Z0U8 | 0.0 | A0A2K1Z0U8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s01530.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3481 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 3e-75 | BEL1-like homeodomain 8 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0049s0270.1.p |