PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0047s0660.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 655aa    MW: 71241.2 Da    PI: 6.1418
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0047s0660.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.56.1e-122454287
                trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                            gf+r++k+Ckek+en++k+yk++keg+ +r+  + +++++f+qlea
  SapurV1A.0047s0660.3.p  2 GFKRNAKKCKEKFENVHKYYKRTKEGRAGRQ--DGKRYRFFSQLEA 45
                            9****************************85..5556*******85 PP
2trihelix105.34.4e-33378463187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW+k evlaLi++r+ +e+r++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke+ k+r +e+ +tcpyf++l+a
  SapurV1A.0047s0660.3.p 378 RWPKPEVLALIKLRSGLETRYQEAGPKGPLWEEISAGMQRMGYRRSAKRCKEKWENINKYFKKVKESHKNR-PEDAKTCPYFHELDA 463
                             8********************************************************************98.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-6246No hitNo description
PROSITE profilePS500907.039371435IPR017877Myb-like domain
PfamPF138379.1E-23377464No hitNo description
CDDcd122034.28E-30378442No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MGFKRNAKKC KEKFENVHKY YKRTKEGRAG RQDGKRYRFF SQLEALHNTT GGGGASASVI  60
NLTGAAPQQI ATPLTSSLDV APVSVGFPMP ISSSVRIPPP SSQALQPASN IGSMFPPDLG  120
ATAAAAAAPP AAGAGPAGIS FSSNGSSSSP SSEDDDDEDE ELLGGQPSAT AAGTSRKRKR  180
AALSSARGET HRMMEFFEGL MKQVMQKQEA MQQRFLEAIE KREQDRMIRD EAWKRQEMAR  240
LSREHEIMAQ ERAISASRDA AIVAFLQKIT GQTIHLPTSV SMAPPFSLPP PPPPQLPEPV  300
QITPLVTVST QPPPTQPQTI PQPQVTLPQQ QQQQYQQGHR QHQLSISSDI VMAVPEQQRA  360
PQEIGSGGGS GSEPASSRWP KPEVLALIKL RSGLETRYQE AGPKGPLWEE ISAGMQRMGY  420
RRSAKRCKEK WENINKYFKK VKESHKNRPE DAKTCPYFHE LDALYRKKIL GGSSGGGGGG  480
GGSTSTSGFD SQSRPQEQQQ QQESLKLDPM PHPMQQPPQQ TQATESQNKN GAGGAVQASN  540
IGLSGSLPGE GNGGASKPED IVKELKKQQG THQQQHLMVD YYDKMEEGDR ENVNEDEYDD  600
EDEGEEDEEE EEEAEGLQEE RKMAYKIEFQ RQNTSSAANG GGTGAPPSFL AMVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311KRNAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0047s0660.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004380.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
TrEMBLG8G9Q90.0G8G9Q9_POPCN; GTL1
STRINGPOPTR_0001s45870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-45Trihelix family protein