PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0047s0510.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 791aa MW: 90559 Da PI: 6.8622

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0047s0510.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.6	3.4e-31	97	189	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r +++k +++ +r+raetr+gCka+l+vk +++g+w+v+ ++ eH SapurV1A.0047s0510.1.p 97 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVDKDKPassDVRVKRPRAETRVGCKAMLVVKIQDSGRWVVSAFVREH 183 9*************************************999998777889999**************************** PP FAR1 86 nHelap 91 nHel+p SapurV1A.0047s0510.1.p 184 NHELVP 189 **86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-29	97	189	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-31	297	389	IPR018289	MULE transposase domain
Pfam	PF04434	7.8E-12	565	611	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.152	577	613	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-8	588	615	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MIMELEPLTM GNEVIEFDMV GLGDDTVDDI HHQSVDEVEE EDGGDGEVEE NHFLLNSYDP 60 RSSHNSISGQ VYTPQGDTNL EPYEGMEFES EEAAKAFYNS YARRVGFSTR VSMSRRSRRD 120 GAIIQRSFVC AKEGFRVDKD KPASSDVRVK RPRAETRVGC KAMLVVKIQD SGRWVVSAFV 180 REHNHELVPP DKVHCLRSHR HVSGSAKSLI DTLQGAGIGP SGIMSALIKE YGGISNVGFT 240 ERDCRNYMRS SRQRTLGGDT QHLLDYLRNK QTENSAFFYA VQGDEDQANY TYFGDTVTFD 300 TTYRSNRYRL PFAPFTGVNH HGQPVLFGCA LLVYESEASF LWLFKTWLMA MSERPPVSIT 360 TDHDRVICLA VNQVFPETRH RFCKWHIFKE FQEKLSHVLS EHPNFEAELH KCVNLTESVE 420 EFESCWLSLL NRYHLGDHEW LQAVYNDRRQ WVPAYLRDAF FAEMSITQRS DSINSYFDGY 480 INASTTLQMF VKQYEKALES RYEKEVKADY DSINTAPALK TPSPMEKQVA ELYSRKLFLK 540 FQKELVETLT FMATKVEDEG AITNYRVAKY GENHKAYTVS FNVREMKASC SCLMFEFSGL 600 LCRHILTVFR VTNVLTLPSH YVLKRWTRNA KSGVILEEHA SDFLSSSRES LTFRYSNLRH 660 EALKYVDNGI QSLEIYNVSM NALQEAANKV ALARKNGGKV PIANRAGREE YTHQGSQANN 720 TNQNQQQGLE QPASGDDQDK KIQKLHRKLE RAQRKCEVYR ANLLSVLKDI EEQKLQLSIK 780 VQNIKLGMKD *

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MIMELEPLTM GNEVIEFDMV GLGDDTVDDI HHQSVDEVEE EDGGDGEVEE NHFLLNSYDP  60
RSSHNSISGQ VYTPQGDTNL EPYEGMEFES EEAAKAFYNS YARRVGFSTR VSMSRRSRRD  120
GAIIQRSFVC AKEGFRVDKD KPASSDVRVK RPRAETRVGC KAMLVVKIQD SGRWVVSAFV  180
REHNHELVPP DKVHCLRSHR HVSGSAKSLI DTLQGAGIGP SGIMSALIKE YGGISNVGFT  240
ERDCRNYMRS SRQRTLGGDT QHLLDYLRNK QTENSAFFYA VQGDEDQANY TYFGDTVTFD  300
TTYRSNRYRL PFAPFTGVNH HGQPVLFGCA LLVYESEASF LWLFKTWLMA MSERPPVSIT  360
TDHDRVICLA VNQVFPETRH RFCKWHIFKE FQEKLSHVLS EHPNFEAELH KCVNLTESVE  420
EFESCWLSLL NRYHLGDHEW LQAVYNDRRQ WVPAYLRDAF FAEMSITQRS DSINSYFDGY  480
INASTTLQMF VKQYEKALES RYEKEVKADY DSINTAPALK TPSPMEKQVA ELYSRKLFLK  540
FQKELVETLT FMATKVEDEG AITNYRVAKY GENHKAYTVS FNVREMKASC SCLMFEFSGL  600
LCRHILTVFR VTNVLTLPSH YVLKRWTRNA KSGVILEEHA SDFLSSSRES LTFRYSNLRH  660
EALKYVDNGI QSLEIYNVSM NALQEAANKV ALARKNGGKV PIANRAGREE YTHQGSQANN  720
TNQNQQQGLE QPASGDDQDK KIQKLHRKLE RAQRKCEVYR ANLLSVLKDI EEQKLQLSIK  780
VQNIKLGMKD *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0047s0510.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006377868.2	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024437102.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K1YKC9	0.0	A0A2K1YKC9_POPTR; Uncharacterized protein
STRING	POPTR_0011s14880.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	SapurV1A.0047s0510.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]