PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0046s0390.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 517aa    MW: 57665.6 Da    PI: 4.7154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0046s0390.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.2e-063243571755
                             HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                             N++f eLr+++P+ +        +Ka+iL  ++ Y+k+L+
  SapurV1A.0046s0390.5.p 324 NDKFLELRSMVPSiS------EIDKASILCDTISYLKQLE 357
                             9************66......8****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-81550IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.677307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7317362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-5321361No hitNo description
SuperFamilySSF474596.94E-9322370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-8324366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MCLSFCSNIT WLVASILQTV VCFPYLEGVI ELGVTELVTE DPSLIQHIKA SLLDFSKPVC  60
SEKSSSSAHN GDDDKDPMST KISHEIVDSF ALENMYTPTE DIELEQEGIN DLHGIVREDF  120
KRSFPDDCSD GCEYNHQTED SFMLEGLNGG VSQVQSWHFM DDELSDDARD SMNSSECISE  180
AVVKQGQAVL SSKGKNVTRL HLQALQEENH TKLSSFDLGA DDDLHYRRTI CVILKSSSQS  240
IDNLCFRSGD YKSSFSSWKR GAVDGLKSRA QQNMLKKVLF AVPLIYGGHS LRSNKENGGA  300
DCLKKLESCE TCKGHYKSDE RRENDKFLEL RSMVPSISEI DKASILCDTI SYLKQLESRV  360
AELESCTGLI DHETGHRSYM DMVDQTSDNY DIKKIDNGKK SWVSKRKARD IDEAEPELDG  420
VSPKDGVPLD LKVCTKEKEV LIEIRCPYRE YMLLDIMDEA SKLQLDVHSV QSSTLDGIFA  480
LTLKSKRGSS CTSRDDQTST LENCLQALSR HVSTGA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0046s0390.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451925.10.0transcription factor EGL1 isoform X1
TrEMBLB9GQ940.0B9GQ94_POPTR; BHLH family protein
STRINGPOPTR_0002s16080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.18e-77bHLH family protein