PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0046s0390.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 661aa MW: 73907.4 Da PI: 5.225 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.8 | 3e-06 | 475 | 508 | 17 | 55 |
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 N++f eLr+++P+ + +Ka+iL ++ Y+k+L+ SapurV1A.0046s0390.3.p 475 NDKFLELRSMVPSiS------EIDKASILCDTISYLKQLE 508 9************66......8****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.3E-53 | 15 | 201 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 10.677 | 458 | 507 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-7 | 468 | 513 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.07E-5 | 472 | 512 | No hit | No description |
SuperFamily | SSF47459 | 9.68E-9 | 473 | 521 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-8 | 475 | 517 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MAHVVRSQQA LQEKLRKQLA IAVRSVQWSY AIFWSLSARQ QGVLEWGDGY YNGDIKTRKV 60 QATELKADKI GLQRSEQLQE LYKSLLGGDA GQQAKRSSPA LSPEDLSDEE WYYLVCMSFV 120 FNPGEGLLSS YRLPGRALAN KQTIWLCNAQ YADSKVFSRS LLAKSASIQT VVCFPYLEGV 180 IELGVTELVT EDPSLIQHIK ASLLDFSKPV CSEKSSSSAH NGDDDKDPMS TKISHEIVDS 240 FALENMYTPT EDIELEQEGI NDLHGIVRED FKRSFPDDCS DGCEYNHQTE DSFMLEGLNG 300 GVSQVQSWHF MDDELSDDAR DSMNSSECIS EAVVKQGQAV LSSKGKNVTR LHLQALQEEN 360 HTKLSSFDLG ADDDLHYRRT ICVILKSSSQ SIDNLCFRSG DYKSSFSSWK RGAVDGLKSR 420 AQQNMLKKVL FAVPLIYGGH SLRSNKENGG ADCLKKLESC ETCKGHYKSD ERRENDKFLE 480 LRSMVPSISE IDKASILCDT ISYLKQLESR VAELESCTGL IDHETGHRSY MDMVDQTSDN 540 YDIKKIDNGK KSWVSKRKAR DIDEAEPELD GVSPKDGVPL DLKVCTKEKE VLIEIRCPYR 600 EYMLLDIMDE ASKLQLDVHS VQSSTLDGIF ALTLKSKFRG AAVAPAGMIK QALWKIACKP 660 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 2e-15 | 7 | 199 | 44 | 227 | Transcription factor MYC3 |
4ywc_A | 2e-15 | 7 | 199 | 44 | 227 | Transcription factor MYC3 |
4ywc_B | 2e-15 | 7 | 199 | 44 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0046s0390.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301357.1 | 0.0 | transcription factor EGL1 isoform X2 | ||||
TrEMBL | B9GQ94 | 0.0 | B9GQ94_POPTR; BHLH family protein | ||||
STRING | POPTR_0002s16080.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 1e-163 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0046s0390.3.p |