PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0046s0390.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 662aa    MW: 73941 Da    PI: 5.0032
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0046s0390.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.83e-064695021755
                             HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                             N++f eLr+++P+ +        +Ka+iL  ++ Y+k+L+
  SapurV1A.0046s0390.2.p 469 NDKFLELRSMVPSiS------EIDKASILCDTISYLKQLE 502
                             9************66......8****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-5515195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.677452501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7462507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-5466506No hitNo description
SuperFamilySSF474599.68E-9467515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-8469511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MAHVVRSQQA LQEKLRKQLA IAVRSVQWSY AIFWSLSARQ QGVLEWGDGY YNGDIKTRKV  60
QATELKADKI GLQRSEQLQE LYKSLLGGDA GQQAKRSSPA LSPEDLSDEE WYYLVCMSFV  120
FNPGEGLPGR ALANKQTIWL CNAQYADSKV FSRSLLAKSA SIQTVVCFPY LEGVIELGVT  180
ELVTEDPSLI QHIKASLLDF SKPVCSEKSS SSAHNGDDDK DPMSTKISHE IVDSFALENM  240
YTPTEDIELE QEGINDLHGI VREDFKRSFP DDCSDGCEYN HQTEDSFMLE GLNGGVSQVQ  300
SWHFMDDELS DDARDSMNSS ECISEAVVKQ GQAVLSSKGK NVTRLHLQAL QEENHTKLSS  360
FDLGADDDLH YRRTICVILK SSSQSIDNLC FRSGDYKSSF SSWKRGAVDG LKSRAQQNML  420
KKVLFAVPLI YGGHSLRSNK ENGGADCLKK LESCETCKGH YKSDERREND KFLELRSMVP  480
SISEIDKASI LCDTISYLKQ LESRVAELES CTGLIDHETG HRSYMDMVDQ TSDNYDIKKI  540
DNGKKSWVSK RKARDIDEAE PELDGVSPKD GVPLDLKVCT KEKEVLIEIR CPYREYMLLD  600
IMDEASKLQL DVHSVQSSTL DGIFALTLKS KRGSSCTSRD DQTSTLENCL QALSRHVSTG  660
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-17719344227Transcription factor MYC3
4ywc_A1e-17719344227Transcription factor MYC3
4ywc_B1e-17719344227Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0046s0390.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451925.10.0transcription factor EGL1 isoform X1
TrEMBLB9GQ940.0B9GQ94_POPTR; BHLH family protein
STRINGPOPTR_0002s16080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-158bHLH family protein