PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0046s0390.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 668aa    MW: 74660.8 Da    PI: 5.053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0046s0390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.83e-064755081755
                             HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                             N++f eLr+++P+ +        +Ka+iL  ++ Y+k+L+
  SapurV1A.0046s0390.1.p 475 NDKFLELRSMVPSiS------EIDKASILCDTISYLKQLE 508
                             9************66......8****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.3E-5315201IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.677458507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7468513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-5472512No hitNo description
SuperFamilySSF474599.81E-9473521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-8475517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MAHVVRSQQA LQEKLRKQLA IAVRSVQWSY AIFWSLSARQ QGVLEWGDGY YNGDIKTRKV  60
QATELKADKI GLQRSEQLQE LYKSLLGGDA GQQAKRSSPA LSPEDLSDEE WYYLVCMSFV  120
FNPGEGLLSS YRLPGRALAN KQTIWLCNAQ YADSKVFSRS LLAKSASIQT VVCFPYLEGV  180
IELGVTELVT EDPSLIQHIK ASLLDFSKPV CSEKSSSSAH NGDDDKDPMS TKISHEIVDS  240
FALENMYTPT EDIELEQEGI NDLHGIVRED FKRSFPDDCS DGCEYNHQTE DSFMLEGLNG  300
GVSQVQSWHF MDDELSDDAR DSMNSSECIS EAVVKQGQAV LSSKGKNVTR LHLQALQEEN  360
HTKLSSFDLG ADDDLHYRRT ICVILKSSSQ SIDNLCFRSG DYKSSFSSWK RGAVDGLKSR  420
AQQNMLKKVL FAVPLIYGGH SLRSNKENGG ADCLKKLESC ETCKGHYKSD ERRENDKFLE  480
LRSMVPSISE IDKASILCDT ISYLKQLESR VAELESCTGL IDHETGHRSY MDMVDQTSDN  540
YDIKKIDNGK KSWVSKRKAR DIDEAEPELD GVSPKDGVPL DLKVCTKEKE VLIEIRCPYR  600
EYMLLDIMDE ASKLQLDVHS VQSSTLDGIF ALTLKSKRGS SCTSRDDQTS TLENCLQALS  660
RHVSTGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A2e-15719944227Transcription factor MYC3
4ywc_A2e-15719944227Transcription factor MYC3
4ywc_B2e-15719944227Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0046s0390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451925.10.0transcription factor EGL1 isoform X1
TrEMBLB9GQ940.0B9GQ94_POPTR; BHLH family protein
STRINGPOPTR_0002s16080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-155bHLH family protein