PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0046s0160.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 497aa    MW: 53394.3 Da    PI: 7.1461
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0046s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY741.9e-23264319259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D+++WrKYGqK+ +g+++pr+YYrCt+a gCp+     r+a+d++++++tYeg+Hnh+
  SapurV1A.0046s0160.1.p 264 SDECQWRKYGQKMANGNPCPRAYYRCTMAvGCPAPS---RCAKDNTILITTYEGNHNHP 319
                             79***************************9****98...888999*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-25248321IPR003657WRKY domain
SuperFamilySSF1182905.36E-21256321IPR003657WRKY domain
PROSITE profilePS5081122.779258321IPR003657WRKY domain
SMARTSM007741.4E-24263320IPR003657WRKY domain
PfamPF031061.5E-19265319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDQQGRELVF MHSGDFLRQN PGVSDHLNDS SSGVHTQPTI KEVDFFSTDR NGKSPSEHQE  60
MKINIGSSSL VDSSINTGLN MSTSSSGISK IANGKEPNNN KLSVLRGELG RLHDENMKLR  120
KLLVQTTKSY KDLQAQLLVA MPKQTQGCRV EQKGELNDTP TPVMSAQHLM DHRPSDITLD  180
VNEPSVSDDK TPELVVSPAN IIEKKSQILG KRASIDDGID QTSRSRGSPK LEQEKPPDEQ  240
VPGVVSFRKA RVSVRARSEA PLISDECQWR KYGQKMANGN PCPRAYYRCT MAVGCPAPSR  300
CAKDNTILIT TYEGNHNHPL PPPATAMANT TSAAAAMLLS GSTTSREGIS SSSCFYPCLP  360
MATLSTSASF PTITLDLTQG PNPTMPFLRT PATFPLPLHG CPQLLGNPMY VGPKLPAILS  420
VQLGQRHASV VETVTAAIAS DPYLTTAVVA AAISTFMGTP RIIDGSYNLS VVPGLRGSPH  480
DAGQLDNAHE GDTELN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-15250322175WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0046s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302808.10.0probable WRKY transcription factor 47
TrEMBLB9GTA40.0B9GTA4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.15e-73WRKY family protein