PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0043s0480.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CPP
Protein Properties Length: 914aa    MW: 99556.5 Da    PI: 6.6562
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0043s0480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.73e-15491530241
                     TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                             ++k+CnC+k+kClk+YC+Cfaag +C+ +C C++C+N+ e
  SapurV1A.0043s0480.1.p 491 DCKRCNCRKTKCLKLYCDCFAAGIYCAGTCACQGCFNRPE 530
                             689**********************************876 PP
2TCR47.73.1e-15578616139
                     TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                             k+k gCnCkks C+kkYCeC++a++ Cs+ C+Ce+C+N 
  SapurV1A.0043s0480.1.p 578 KHKTGCNCKKSMCVKKYCECYQANVGCSNACRCEGCRNI 616
                             5899**********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.6E-14490531IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.33491618IPR005172CRC domain
PfamPF036385.6E-11493528IPR005172CRC domain
SMARTSM011142.5E-15578619IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.9E-11581615IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MDSPKATTTT NTISATAATV SLSDSPPVQE SPFSNYISNL SPIKPVNTAH VAHGLLGINS  60
PPLVFKSPHT ASDRQIYLLR RFQYPQISGA ETSKIDDGRK KAVDGLEDMG KSIRFLTSNL  120
IVDAQKSDNV NNSEQDQPGS SSGCVDDYLS DPVDADCANS VNLVNSNVKK SDDALQASES  180
NLTDLKIVES DDINDKGTKG EVSQARPEQD GEDIKEQPTS ETKMEKIKED GSIAKQPSHV  240
CPNFGSDLLV DHASRQQCYT SGAQVAHPHE PIQLKTYNGS EVSQLQRGMS RRCLQFEQAQ  300
QETIMDGTYP PTPAINLFGS ISPASSTELE ILDSSQVELT ISPYKEQTMT AIFSADISGK  360
SPLAVSKPSG IGLHLNSIVN TLPMGSSASK STMSHHLVEN KISCSKLLNL VERVSLTAGD  420
RVLQTKASLA TSPATSESFH NMEFFNNLQP PEQVTPHNKR RFSSEHAGNF EWSPSSPRKK  480
RKKASSTVGD DCKRCNCRKT KCLKLYCDCF AAGIYCAGTC ACQGCFNRPE YDETVLETRQ  540
QIESRNPLAF APKIVQHVTE FQAIDAEDLG LFTPYSGKHK TGCNCKKSMC VKKYCECYQA  600
NVGCSNACRC EGCRNIHGRK EEYAMTQEIV IKRANEENLE GMAGEKLKMV ANNKFLHAEL  660
YDLRSLTPPT PSFEYLSHGK DTPKSRLLPG RYVLSSESDF SMLPSYAKSS SSPSNSHGND  720
MLPNTSKTLD MAILGQELDY NSTEMTGQFS PQFDGLADFS DQTPLLNPSS IMMASSASSK  780
TQDKANDSQP QVYPGSARLS PGSSLCWRSS PITPMTRLGE TKNQAQDSDC GLCDILEDDT  840
PEILKDSSAP VTSVKSSSPN KKRVSPPQSH TREFQSSSSA GLKSGRKFIL KSVPSFPPLT  900
PCLDSKDCTR KKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-164686161121Protein lin-54 homolog
5fd3_B7e-164686161121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1458480KRRFSSEHAGNFEWSPSSPRKKR
2478482KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0043s0480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460158.10.0CRC domain-containing protein TSO1 isoform X1
RefseqXP_024460159.10.0CRC domain-containing protein TSO1 isoform X1
TrEMBLA0A3N7F4V80.0A0A3N7F4V8_POPTR; Uncharacterized protein
STRINGXP_002515547.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.19e-57Tesmin/TSO1-like CXC domain-containing protein