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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
SapurV1A.0042s0630.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family |
SRS |
| Protein Properties |
Length: 346aa MW: 36136.8 Da PI: 8.4981 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0042s0630.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 208.4 | 1.9e-64 | 133 | 289 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89
s t++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq +++a a ++ +++ k++r ++q+++s+t
SapurV1A.0042s0630.2.p 133 SATTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCVTHVKSTWVPAARRRERQLMATA-GGGAGSTGSTSGVKKPRLI--SSQTTTSHT 216
57899********************************************9765555.4566666688888888875..777777888 PP
DUF702 90 klssaeskkeletss........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
++s+++ + ++ s+ lP +v ++a frcvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e+
SapurV1A.0042s0630.2.p 217 STSNTTRSYDTSSSHqdagfkerLPGQVTAPATFRCVRVTAVEDGEDEFAYQAVVKIGGHVFKGFLYDQGVET 289
88887777666665578999999***********************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MGMVGLRDVF VVAPAAFNHH HQHHEQINLS TADPINASNA TALGVGVIPL LTAAPCLAPQ 60
NMDDQDLMNN GRNKVSGIHQ FWQNQGSQYI KKASNTTPIL DHHNNSSTAN FLLQSGNSAG 120
NGSGSLGGNS SSSATTTCQD CGNQAKKDCS HRRCRTCCKS RGFDCVTHVK STWVPAARRR 180
ERQLMATAGG GAGSTGSTSG VKKPRLISSQ TTTSHTSTSN TTRSYDTSSS HQDAGFKERL 240
PGQVTAPATF RCVRVTAVED GEDEFAYQAV VKIGGHVFKG FLYDQGVETR DGFPNISELH 300
LGGGRSSGNG VGRNGASSPI LDPSDVYGAS AGGLLGGSGY GNPIN*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 2e-79 | Lateral root primordium (LRP) protein-related |
