PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0042s0630.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

SRS

Protein Properties

Length: 346aa MW: 36136.8 Da PI: 8.4981

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0042s0630.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	208.4	1.9e-64	133	289	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89 s t++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq +++a a ++ +++ k++r ++q+++s+t SapurV1A.0042s0630.1.p 133 SATTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCVTHVKSTWVPAARRRERQLMATA-GGGAGSTGSTSGVKKPRLI--SSQTTTSHT 216 57899******************************************9765555.4566666688888888875..777777888 PP DUF702 90 klssaeskkeletss........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s+++ + ++ s+ lP +v ++a frcvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e+ SapurV1A.0042s0630.1.p 217 STSNTTRSYDTSSSHqdagfkerLPGQVTAPATFRCVRVTAVEDGEDEFAYQAVVKIGGHVFKGFLYDQGVET 289 88887777666665578999999*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.1E-61	135	288	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.8E-27	137	179	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.5E-28	239	287	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGMVGLRDVF VVAPAAFNHH HQHHEQINLS TADPINASNA TALGVGVIPL LTAAPCLAPQ 60 NMDDQDLMNN GRNKVSGIHQ FWQNQGSQYI KKASNTTPIL DHHNNSSTAN FLLQSGNSAG 120 NGSGSLGGNS SSSATTTCQD CGNQAKKDCS HRRCRTCCKS RGFDCVTHVK STWVPAARRR 180 ERQLMATAGG GAGSTGSTSG VKKPRLISSQ TTTSHTSTSN TTRSYDTSSS HQDAGFKERL 240 PGQVTAPATF RCVRVTAVED GEDEFAYQAV VKIGGHVFKG FLYDQGVETR DGFPNISELH 300 LGGGRSSGNG VGRNGASSPI LDPSDVYGAS AGGLLGGSGY GNPIN*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGMVGLRDVF VVAPAAFNHH HQHHEQINLS TADPINASNA TALGVGVIPL LTAAPCLAPQ  60
NMDDQDLMNN GRNKVSGIHQ FWQNQGSQYI KKASNTTPIL DHHNNSSTAN FLLQSGNSAG  120
NGSGSLGGNS SSSATTTCQD CGNQAKKDCS HRRCRTCCKS RGFDCVTHVK STWVPAARRR  180
ERQLMATAGG GAGSTGSTSG VKKPRLISSQ TTTSHTSTSN TTRSYDTSSS HQDAGFKERL  240
PGQVTAPATF RCVRVTAVED GEDEFAYQAV VKIGGHVFKG FLYDQGVETR DGFPNISELH  300
LGGGRSSGNG VGRNGASSPI LDPSDVYGAS AGGLLGGSGY GNPIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0042s0630.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006379117.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	4e-93	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	U5G3K7	1e-180	U5G3K7_POPTR; Uncharacterized protein
STRING	POPTR_0009s07510.1	1e-180	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-79	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	SapurV1A.0042s0630.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]