PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0041s0840.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 479aa    MW: 53019.9 Da    PI: 6.8367
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0041s0840.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-18130176148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g WT+eEd +l+++vkq+G ++W+ Ia+++  gR +kqc++rw+++l
  SapurV1A.0041s0840.1.p 130 KGQWTEEEDRKLIRLVKQFGVRNWAQIAEKLH-GRIGKQCRERWHNHL 176
                             799*****************************.*************97 PP
2Myb_DNA-binding56.56.4e-18182224145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             +++W++eE+ +lv+a+++ G++ W+ Ia+ ++ gRt++ +k++w+
  SapurV1A.0041s0840.1.p 182 KDSWSEEEESILVEAHTKVGNR-WAEIAKLIP-GRTENAIKNHWN 224
                             679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.589125180IPR017930Myb domain
SuperFamilySSF466891.73E-30128223IPR009057Homeodomain-like
SMARTSM007177.6E-18129178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-28131183IPR009057Homeodomain-like
PfamPF139214.0E-18133191No hitNo description
CDDcd001671.98E-16133176No hitNo description
SMARTSM007171.6E-16181229IPR001005SANT/Myb domain
PROSITE profilePS5129420.483181231IPR017930Myb domain
CDDcd001671.68E-12184227No hitNo description
Gene3DG3DSA:1.10.10.601.9E-20184229IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEGGGFGGRF GNRNLKNDRS SIYPPLTATD RFLCGQSHFT PQNIQNKETI VSNNGLCGFY  60
PPSGAAGAVP WPNFQDTSFA DGLFVGGDSL YWTFEGNPIG GLNGKVNASG KSSKGIAKKT  120
KKGSSATLIK GQWTEEEDRK LIRLVKQFGV RNWAQIAEKL HGRIGKQCRE RWHNHLRPHI  180
KKDSWSEEEE SILVEAHTKV GNRWAEIAKL IPGRTENAIK NHWNATKRRQ NSRRKHKQTE  240
NQTGKPKSSI LQDYIRSKDL KNASTSVTTT TNSTPSSSLS ADPSSQINYF LPELSESNTD  300
DDSPSSLLAQ TCNDDELLFI QNLFANKPKE PLTDKAAMEN PILKANSFNA DPFNIDSLSM  360
DSWGIYQNSG GQLLKDGNGN ENGFVCSSLN PKLCTNCLQA EEDDQTPTYN HLHSDLYLSY  420
LLNEASSDPC SCSTEYGYSS MINLDLEMDQ TDSPKGKKEM DLIEMICSSQ FSQGSNKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-471282302104C-Myb DNA-Binding Domain
1msf_C4e-471282302104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0041s0840.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035335.10.0PREDICTED: transcription factor MYB98-like
TrEMBLB9GIJ30.0B9GIJ3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s25710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.18e-70myb domain protein 119