PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0041s0720.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 308aa MW: 34495.6 Da PI: 9.8169 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 135 | 179 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++++ k++G+g+W+ I+r + Rt+ q+ s+ qky SapurV1A.0041s0720.1.p 135 PWTEEEHKLFLKGLKKYGKGDWRNISRNFVVSRTPTQVASHAQKY 179 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.252 | 24 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 6.0E-8 | 25 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.37E-10 | 27 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.41E-7 | 28 | 74 | No hit | No description |
PROSITE profile | PS51294 | 21.915 | 128 | 184 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.74E-17 | 130 | 183 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-18 | 131 | 183 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 8.0E-14 | 132 | 182 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-13 | 132 | 179 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-11 | 135 | 180 | No hit | No description |
Pfam | PF00249 | 4.4E-13 | 135 | 179 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MKWEKEILSP APYLSRANWL IEESKNTKWT PAENKAFENA LAVYDDDTPD RWHKVAAIIP 60 GKTVRDVIKQ YKELELDVSY IEAGLIPVPG YSTSPFTLDW VNENDNDGFK KSFGLGGKRS 120 STGRPADQER KKGVPWTEEE HKLFLKGLKK YGKGDWRNIS RNFVVSRTPT QVASHAQKYF 180 IRQLSGGKDK RRSSIHDITT VNLNDAGTPS PDNKRPSPDQ SGEISQQPNS AAMPRTHFQW 240 NQPSGGGAIA FDSTNANMFM SAPYGINSSY GLKMQGHNSL RGAVHDSYIR QQTMGFQMPS 300 AHHYPHV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-17 | 29 | 94 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0041s0720.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299827.2 | 0.0 | transcription factor DIVARICATA | ||||
Refseq | XP_024448358.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-137 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | B9GIV0 | 0.0 | B9GIV0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s25590.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 6e-94 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0041s0720.1.p |
Publications ? help Back to Top | |||
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