PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0041s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 710aa    MW: 78372.7 Da    PI: 9.8206
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0041s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07608657147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                             r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  SapurV1A.0041s0150.1.p 608 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 657
                             6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.04E-6413500IPR029071Ubiquitin-related domain
PROSITE profilePS500539.395418488IPR000626Ubiquitin domain
PROSITE profilePS5129414.733603662IPR017930Myb domain
SMARTSM007172.0E-7607660IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10608658IPR009057Homeodomain-like
SuperFamilySSF466891.35E-15609690IPR009057Homeodomain-like
CDDcd116602.06E-17609659No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MVLDKRLHYG FNGYQVPPMP RATRSARRRR SFKKKHEENK MCAFDLLAIV AGNLLLDKES  60
APSSSNTTAD KNQCAAVNSN VKYEWQDEEK PLKVEACDHG SAARNFFVCG PSQVHGQGCS  120
SKEPLVAQNN LNLRLASALT KSDWAGRSDA EKLGNDKSKN DMGTFARKVE GVSSEYREFG  180
DCILEVETKR AVKDEPGRFG MVLGSNVANA CSLEDPVVLD AKPPALASLD SSAKVPLCRN  240
HIPNSSYPTN RDDVNVVSRD DDENSGCSHP ITKKKFFRPA PRIGNRRIRK IMASKYRKVA  300
PRFKDGTVSN PDGDLKPVFR KRKNYYRQQR SERLYPFKKR KHYAYSSPSN SYGGMSCNGD  360
ASGSCSRMHG VTGASSSFVA QHTSLQPRDS HGMRTFNGGA SSSFVGQRTS FQPRDCHVKL  420
RIKSFRVPEL LVEIPESSTV GSLKRTVMEA VTAILGGGLR VGVLLQGKKV RDDNKTLLQT  480
GISHNNQLDS LGFCLEPNPS RTPPSLCPGD SPFLLQCDTP EPLSRCPPTA DVVCQGICTG  540
SPEPHVNNLG NYIESDHDSA SSPADTSMDK STNSKALVAV PAMNVEALAV VPAHRNSKQS  600
EIVQRRIRRP FSVAEVEALV QAVEKLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT  660
ARISPQQRRG EPVPQELLDR VLTTHAYWSQ QQASQQLKPQ QQAETCLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-565926991108Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12834RRSFKKK
2320340KRKNYYRQQRSERLYPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0041s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089320.0AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299868.20.0telomere repeat-binding protein 2 isoform X1
SwissprotQ6R0E31e-140TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLB9GJM20.0B9GJM2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s24840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-116TRF-like 2